PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0711s0090.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 478aa    MW: 53454.2 Da    PI: 8.5155
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0711s0090.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.4e-20109199199
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             f+k l++s+v +  ++ lp +f+++h  ++   + t+tl de g+++++k+i  k++    l++GW++F+ a++L egD++vF+l+g
  SapurV1A.0711s0090.3.p 109 FVKSLVRSHVASCFWMGLPGSFCRAHlPHV---DATVTLLDECGKEFKMKYIAYKTG----LSAGWRQFCVAHQLFEGDVLVFQLIG 188
                             89************************5333...569***************666665....9************************* PP

                             SSEE..EEEEE-S CS
                      B3  87 rsefelvvkvfrk 99 
                             + +f  +v v+r+
  SapurV1A.0711s0090.3.p 189 SCTF--KVYVIRA 199
                             8888..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-21102200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-25103200IPR015300DNA-binding pseudobarrel domain
CDDcd100172.89E-26107198No hitNo description
PfamPF023621.1E-17109199IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985109200IPR003340B3 DNA binding domain
SMARTSM010193.0E-23109200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MSGRVKKEAE ETDLIKPQPF HEENRKYVED GDGKQKSPME TTAKRLKIKR RYSDSKLKFV  60
ISGHAGKCAC CRQNKAPVER SNTVGEVKSS ALIRAEEVQS NLEPAFPSFV KSLVRSHVAS  120
CFWMGLPGSF CRAHLPHVDA TVTLLDECGK EFKMKYIAYK TGLSAGWRQF CVAHQLFEGD  180
VLVFQLIGSC TFKVYVIRAN DLTEVDGALG LLNLDAQIKQ NIADNAGRDT AACKSSKRKR  240
PRSLPLAIVQ KKNKKSGQPR SSVLQAGQPA EQSENDSEEV GSEVLEGFKL SLPAVQFKDI  300
KSFEDFNILV DGLLLDSELS EDIRNKYYKL CCSQNAFLHD NLIKGVNLKL IAGIISETVN  360
IADAMRACTL TTSRDEFGTW DKALKASELF GMNVGFLRTK LGLLLSLAFD SEGAAKTRRY  420
IEARLKRVQT EDEIRNLEAK LVELKETYER YGADVERLKS KAEDYEVRFQ EQVLAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0711s0090.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010190.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLB9HHH50.0B9HHH5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11170.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-38B3 family protein