PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0710s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 302aa    MW: 33341.7 Da    PI: 7.957
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0710s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-151461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+ Ed++l  ++k +G g W+  +++ g++R++k+c++rw++yl
  SapurV1A.0710s0070.1.p 14 RGAWTALEDKILTAYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                            89********************************************97 PP
2Myb_DNA-binding51.91.8e-1667111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ + +E+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ 
  SapurV1A.0710s0070.1.p  67 RGNISNDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                             78899*****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.991961IPR017930Myb domain
SuperFamilySSF466893.05E-2712108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002494.1E-131461IPR001005SANT/Myb domain
CDDcd001674.53E-91661No hitNo description
PROSITE profilePS5129424.95462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2365115IPR009057Homeodomain-like
SMARTSM007172.9E-1566114IPR001005SANT/Myb domain
PfamPF002493.5E-1467111IPR001005SANT/Myb domain
CDDcd001672.50E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAL EDKILTAYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SNDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKASAQS  120
SPQSKQTSQS LKKRAIEQSM TNTQSSKPAL AIQVIPTKAT RCTKVLLSLQ SPPPPPPPPP  180
EIVSSAVADD PSQASLLNHQ RASPDFQCRP EELHACDDGS DFLNFGPWSE FQPSDGIGGD  240
ALIDNDCGKN LSIGSGHSLA LSDDLLFKDW ALNRCLDDNS TLDLESLAHL LDSEEWPEMR  300
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0710s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019362.11e-175PREDICTED: myb-related protein 308-like
TrEMBLC5HYE61e-172C5HYE6_POPTM; MYB transcription factor R2R3-like protein
STRINGPOPTR_0006s23840.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.15e-60myb domain protein 4