PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0710s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 269aa    MW: 29816.5 Da    PI: 6.1515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0710s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-181158148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+ Ed++l ++v+ +G g+W++++++ g++R++k+c++rw++yl
  SapurV1A.0710s0050.1.p 11 RGAWTATEDKILTEYVRNHGEGNWARVPKETGLKRCGKSCRLRWLNYL 58
                            89********************************************97 PP
2Myb_DNA-binding47.73.6e-1564108147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+  ++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  SapurV1A.0710s0050.1.p  64 RGNIGPDEEDLILRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNST 108
                             677789****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.678658IPR017930Myb domain
SuperFamilySSF466898.98E-299105IPR009057Homeodomain-like
SMARTSM007179.8E-141060IPR001005SANT/Myb domain
PfamPF002499.0E-171158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-221265IPR009057Homeodomain-like
CDDcd001673.21E-111358No hitNo description
PROSITE profilePS5129424.09459113IPR017930Myb domain
SMARTSM007176.2E-1563111IPR001005SANT/Myb domain
PfamPF002491.1E-1364108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-2466113IPR009057Homeodomain-like
CDDcd001675.11E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRSPKGGII RGAWTATEDK ILTEYVRNHG EGNWARVPKE TGLKRCGKSC RLRWLNYLKP  60
DVKRGNIGPD EEDLILRLHK LLGNRWALIA GRLPGRTDNE IKNYWNSTLK RKVQADDSQK  120
QPRRGNAATK KQTRKTPAAL NKVAPCTDSS PPSPPDLAEN KEAGQILTAS SIEGGALENF  180
LIENSNLNDE LLLFTNDNDA PCNFLMDLGV EQMSFSDLLH TDIFSNSNNM HVNGPTPSYP  240
DEASFFPEAL LQNWICEDGF ELELATGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-2991135108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0710s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5885480.0FJ588548.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB183) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309470.21e-168transcription factor WER
TrEMBLB9HD141e-166B9HD14_POPTR; MYB family protein
STRINGPOPTR_0006s23810.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.16e-54MYB family protein