PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0710s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 200aa MW: 23068.2 Da PI: 9.8741 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.8 | 1.4e-19 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+++++ +G+++W+++a++ g++R++k+c++rw ++l SapurV1A.0710s0030.1.p 17 RGAWTAEEDQKLAQVIEIHGPKRWRSVAAKAGLNRCGKSCRLRWMNHL 64 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l SapurV1A.0710s0030.1.p 70 RGNISDQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 115 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.566 | 12 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-16 | 16 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.91E-29 | 16 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-18 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-25 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.96E-12 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 21.012 | 69 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 70 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 72 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.89E-10 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MPMAPMRGRC NKKEANRGAW TAEEDQKLAQ VIEIHGPKRW RSVAAKAGLN RCGKSCRLRW 60 MNHLRPNIKR GNISDQEEDL IVRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKIK 120 QNEEPVRSSR WKEPGTVKTK VQDMDSVAKR SEEGTSKTLE DSKYSFGGDG FFDFSNEDPM 180 NLEWMSKFLE LDETLYDFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-31 | 14 | 119 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0710s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308525.1 | 1e-135 | transcription factor MYB114 | ||||
Swissprot | P10290 | 3e-51 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | B9HD12 | 1e-134 | B9HD12_POPTR; MYB family protein | ||||
STRING | POPTR_0006s23780.1 | 1e-134 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 6e-53 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0710s0030.1.p |