PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0709s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 293aa    MW: 33326.6 Da    PI: 9.5003
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0709s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-092167347
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                             WT+eE +++ +a + +  +   +W ++a++++ g+t +++++ + k+
  SapurV1A.0709s0190.1.p 21 EWTKEENKKFERALAIFDEHgpdRWLKVAAMIP-GKTVNDVIEQYKKL 67
                            5************9865444455**********.**********9986 PP
2Myb_DNA-binding41.53.2e-13121165347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  SapurV1A.0709s0190.1.p 121 PWTEEEHRQFLMGLLKHGKGDWRNISRNFVGSKTPTQVASHAQKY 165
                             8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.1581772IPR017884SANT domain
SMARTSM007179.7E-81870IPR001005SANT/Myb domain
SuperFamilySSF466895.53E-112173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-52167IPR009057Homeodomain-like
CDDcd001671.21E-102167No hitNo description
PfamPF002493.2E-82167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10113166IPR009057Homeodomain-like
PROSITE profilePS5129418.755114170IPR017930Myb domain
SuperFamilySSF466897.18E-17115170IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-16117169IPR006447Myb domain, plants
SMARTSM007172.0E-11118168IPR001005SANT/Myb domain
CDDcd001678.64E-10121166No hitNo description
PfamPF002498.8E-11121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
METLNSSWGM SNPILVSQTI EWTKEENKKF ERALAIFDEH GPDRWLKVAA MIPGKTVNDV  60
IEQYKKLEED VDDIESGRVP VPGYLNSSFT FEFVDNSTFN ESRKRPLNIK SADQQRKKGV  120
PWTEEEHRQF LMGLLKHGKG DWRNISRNFV GSKTPTQVAS HAQKYFIRQQ LSGVKDKRRP  180
SIHDITTLNL ADSTTPLDGD KASSLDQSDV LFPQQKPAGM QKLLIDWDES MDGSFMTFGS  240
THGDLFKSPP YEISSNGQTF QRQNLYAGAR HAARIKPRNL VFQLSPPRFK IH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-15221101193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0709s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311203.30.0transcription factor DIVARICATA
SwissprotQ8S9H71e-85DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9HHK80.0B9HHK8_POPTR; MYB family protein
STRINGPOPTR_0008s06450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.13e-83MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]