PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0709s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 431aa    MW: 46618.8 Da    PI: 5.5047
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0709s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-1769114147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  SapurV1A.0709s0060.1.p  69 KGPWSPEEDAVLSQLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 114
                             79******************************.***********985 PP
2Myb_DNA-binding60.14.9e-19121165147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             r+++++eEd +++ a++++G++ W++Iar ++ gRt++++k++w++ 
  SapurV1A.0709s0060.1.p 121 RKPFSEEEDRIIIAAHAKHGNK-WAAIARLLP-GRTDNSIKNHWNST 165
                             789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.57664119IPR017930Myb domain
SuperFamilySSF466891.58E-3166162IPR009057Homeodomain-like
SMARTSM007173.2E-1568117IPR001005SANT/Myb domain
PfamPF002498.1E-1769114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2570122IPR009057Homeodomain-like
CDDcd001671.59E-1471113No hitNo description
PROSITE profilePS5129421.976120170IPR017930Myb domain
SMARTSM007177.1E-18120168IPR001005SANT/Myb domain
PfamPF002497.2E-17121165IPR001005SANT/Myb domain
CDDcd001673.68E-14123166No hitNo description
Gene3DG3DSA:1.10.10.604.7E-24123169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MFSIERDKQE NGNLKKMQNQ TENNIDAVGI TEGDREKQTN SPTGGDGGAE SGELGGGSGG  60
NGGANGKVKG PWSPEEDAVL SQLVSKFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPCLT  120
RKPFSEEEDR IIIAAHAKHG NKWAAIARLL PGRTDNSIKN HWNSTLRRRW ADLIRLKPET  180
SDMMEDGSNE ITRASSEETL SVCDISSSQP PEVRDVTIDD QPSQHEDKAQ TDTTPQTNEV  240
TVATEPNGNS TLPRPVARVS AFKVYNPPSG LKMSFGLTRT IPTHGPLVQT PKPDKNSGSC  300
KFLEDVHCEP TIPSRCGYGC CATPSGNHPP SSLLGPEFVD YEEPPPFSSQ ELISIATDLN  360
NIAWMKSGLE NSSSGIPSDA ASYRMSQGTP VDSQMGMSEQ NLRNGHMYFE EGRSRLMGTM  420
AGTISTQMPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-38681693104C-Myb DNA-Binding Domain
1msf_C3e-38681693104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0709s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2784560.0GU278456.1 Populus balsamifera isolate WHR03 haplotype A myb family transcription factor 109 gene, partial sequence.
GenBankGU2784590.0GU278459.1 Populus balsamifera isolate STL13 haplotype B myb family transcription factor 109 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462232.10.0transcription factor MYB1
TrEMBLA0A2K1ZCQ70.0A0A2K1ZCQ7_POPTR; Uncharacterized protein
STRINGcassava4.1_008330m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-107myb domain protein 109