PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0708s0190.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 586aa MW: 65722.4 Da PI: 4.4566 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.7 | 8.2e-11 | 429 | 471 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k SapurV1A.0708s0190.5.p 429 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 471 59*******************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 7.8E-28 | 421 | 503 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 426 | 471 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.733 | 426 | 477 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-7 | 427 | 475 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.72E-11 | 429 | 478 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.86E-7 | 430 | 471 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MESVMAPPTD VQLVPSETIN IEGSSVGAFP SDNIVDSLST HPGDFIPPDT CTSEIQMNLE 60 LENLTETNVT GIHQEDASDL PEKETSSSRK RKDAPASYSS WKSQKASLAG DMNEHDRSPR 120 HPRKQVADEP EDEGHGNGGL TLDNIDDDSS MHSDNFIPVD PCTLEAQVDQ NQKYFTESNC 180 LANANVVHSE DVPVVPGKES SKSGKRKVLS ASNCSRKSKK SSLAAGTQVV DELDEAQGNG 240 GLPAEPPGSS VDEEDNDYEP GGDEERDDEN RVQIASRKKR ASKKSKEPVT EKEKQVRKCN 300 RSNDTPEQPM QEPRKKFSHS TRRNKRCVKK DLLDMPEDEI DFKRLPIRDI ILFAEYKERL 360 SVKEATTSKI PPNNQSSDNP FHGGYSHYEE DEFAPEQDKT HDDDQTYVRA QPSSSLFNHQ 420 SFADRAPNSR WSKQDTELFY EGIQQFGTDL SMIQQLFPGR TRHQVKLKYK KEERQNPLRL 480 HEALSRRPKD NSYFEKLIEQ LQEVAAIREE QESYKDDLVD VSGEEDAELN AENNDEVTKP 540 KQDEDVGVEE DQEENVVAED HHGPPKSGVS DEDVGDIWGS YGSEF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 219 | RKVLSASNCSRKSKK |
2 | 278 | 286 | KRASKKSKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0708s0190.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214213 | 1e-156 | AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024467169.1 | 0.0 | transcription factor TFIIIB component B'' homolog isoform X5 | ||||
TrEMBL | A0A3N7FQI3 | 0.0 | A0A3N7FQI3_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_000789m | 1e-113 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 2e-47 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0708s0190.5.p |