PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0708s0190.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 586aa    MW: 65722.4 Da    PI: 4.4566
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0708s0190.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.2e-11429471246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rW++++ el++++++q+G++  + I + ++ gRt+ q+k+++ k
  SapurV1A.0708s0190.3.p 429 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 471
                             59*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159637.8E-28421503No hitNo description
Gene3DG3DSA:1.10.10.602.3E-6426471IPR009057Homeodomain-like
PROSITE profilePS5129310.733426477IPR017884SANT domain
SMARTSM007171.7E-7427475IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-11429478IPR009057Homeodomain-like
CDDcd001678.86E-7430471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MESVMAPPTD VQLVPSETIN IEGSSVGAFP SDNIVDSLST HPGDFIPPDT CTSEIQMNLE  60
LENLTETNVT GIHQEDASDL PEKETSSSRK RKDAPASYSS WKSQKASLAG DMNEHDRSPR  120
HPRKQVADEP EDEGHGNGGL TLDNIDDDSS MHSDNFIPVD PCTLEAQVDQ NQKYFTESNC  180
LANANVVHSE DVPVVPGKES SKSGKRKVLS ASNCSRKSKK SSLAAGTQVV DELDEAQGNG  240
GLPAEPPGSS VDEEDNDYEP GGDEERDDEN RVQIASRKKR ASKKSKEPVT EKEKQVRKCN  300
RSNDTPEQPM QEPRKKFSHS TRRNKRCVKK DLLDMPEDEI DFKRLPIRDI ILFAEYKERL  360
SVKEATTSKI PPNNQSSDNP FHGGYSHYEE DEFAPEQDKT HDDDQTYVRA QPSSSLFNHQ  420
SFADRAPNSR WSKQDTELFY EGIQQFGTDL SMIQQLFPGR TRHQVKLKYK KEERQNPLRL  480
HEALSRRPKD NSYFEKLIEQ LQEVAAIREE QESYKDDLVD VSGEEDAELN AENNDEVTKP  540
KQDEDVGVEE DQEENVVAED HHGPPKSGVS DEDVGDIWGS YGSEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205219RKVLSASNCSRKSKK
2278286KRASKKSKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0708s0190.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142131e-156AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467169.10.0transcription factor TFIIIB component B'' homolog isoform X5
TrEMBLA0A3N7FQI30.0A0A3N7FQI3_POPTR; Uncharacterized protein
STRINGcassava4.1_000789m1e-113(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-47MYB_related family protein