PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0708s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 614aa    MW: 68764.8 Da    PI: 4.3997
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0708s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.7e-11457499246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rW++++ el++++++q+G++  + I + ++ gRt+ q+k+++ k
  SapurV1A.0708s0190.1.p 457 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 499
                             59*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159638.3E-28449531No hitNo description
PROSITE profilePS5129310.733454505IPR017884SANT domain
SMARTSM007171.7E-7455503IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-10457506IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-6458499IPR009057Homeodomain-like
CDDcd001678.86E-7458499No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MNDYEKCENL ESGAFPGLET PGFLSPDVME SVMAPPTDVQ LVPSETINIE GSSVGAFPSD  60
NIVDSLSTHP GDFIPPDTCT SEIQMNLELE NLTETNVTGI HQEDASDLPE KETSSSRKRK  120
DAPASYSSWK SQKASLAGDM NEHDRSPRHP RKQVADEPED EGHGNGGLTL DNIDDDSSMH  180
SDNFIPVDPC TLEAQVDQNQ KYFTESNCLA NANVVHSEDV PVVPGKESSK SGKRKVLSAS  240
NCSRKSKKSS LAAGTQVVDE LDEAQGNGGL PAEPPGSSVD EEDNDYEPGG DEERDDENRV  300
QIASRKKRAS KKSKEPVTEK EKQVRKCNRS NDTPEQPMQE PRKKFSHSTR RNKRCVKKDL  360
LDMPEDEIDF KRLPIRDIIL FAEYKERLSV KEATTSKIPP NNQSSDNPFH GGYSHYEEDE  420
FAPEQDKTHD DDQTYVRAQP SSSLFNHQSF ADRAPNSRWS KQDTELFYEG IQQFGTDLSM  480
IQQLFPGRTR HQVKLKYKKE ERQNPLRLHE ALSRRPKDNS YFEKLIEQLQ EVAAIREEQE  540
SYKDDLVDVS GEEDAELNAE NNDEVTKPKQ DEDVGVEEDQ EENVVAEDHH GPPKSGVSDE  600
DVGDIWGSYG SEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233247RKVLSASNCSRKSKK
2306314KRASKKSKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0708s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142131e-156AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467164.10.0transcription factor TFIIIB component B'' homolog isoform X1
RefseqXP_024467165.10.0transcription factor TFIIIB component B'' homolog isoform X1
TrEMBLA0A3N7FMI00.0A0A3N7FMI0_POPTR; Uncharacterized protein
STRINGcassava4.1_000789m1e-113(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-47MYB_related family protein