PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0702s0020.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 786aa    MW: 87619 Da    PI: 6.8395
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0702s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-094991347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +WT +E+e +  a +q G++ +++I r+++  +   q++++++ +
  SapurV1A.0702s0020.2.p 49 AWTHQEEESFFTALRQVGKN-FEKITRHVQ-SKNKDQVRHYYYRL 91
                            6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-113296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-64494IPR009057Homeodomain-like
PROSITE profilePS5129314.774596IPR017884SANT domain
SMARTSM007171.4E-64694IPR001005SANT/Myb domain
PfamPF002491.5E-64991IPR001005SANT/Myb domain
CDDcd001673.18E-64992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MEAQVSLDSE QQLLQNSSIQ DGDPGVTSST LDCIETQQPE KRPTRQWAAW THQEEESFFT  60
ALRQVGKNFE KITRHVQSKN KDQVRHYYYR LVRRMNKLLG PGMCLDAKDS KDTNAAMLRW  120
WSLLEKYSCK ASKLHLKPRR FKIFIEALNQ LSKDRRKNVR KRSSQGENGS PATPSIITNQ  180
NRASVHDNRT VKLVLVDSQS IQKLGGKGSL KRNVNMGVIR NNNKGDSTAM KPARQRRNPV  240
SSAAYKKWEK AAIAGVSLVA DAAEHLERTA TDKEDEHDKG KKHLDPVEKL HPYFHPLLHC  300
VESNAHTNTK LKLQLFPIDD GTRRALEMDK HNPHLELTLS TRKKISSVLE HLNRKWGDST  360
VASGELMLFP YGVNRENLAG YQRWTQDSLV SAADVYFSIG SPPMFRLRYG WFSNVYFASV  420
TLQAPSTYSC LPDGGNEKKT MDSVSTAEPS TSDQFEKPEN PCRDCPTSVN NNHASILHSA  480
GVTNENNEFI ATGPRNNLVK SLDPAANIPL HRKETDDRTN TQQLEDVDDL RLSNVNPLSA  540
GEWADSLTNV SVGDLLSELP HEANHNCIEP PIVQSNQCLQ QIPFSCDSFD AAIAAHILRN  600
QGKMGIHFSV ASHTSSIWDG EETCDAFAFQ KNHSSRKEVT TSSAVTSPRV SKQMDRTSSI  660
TSNSFLEELP IIEGPIDYPT GGDPLDECPS DSQVVSNQVK DFNELTDIFW PESLGLLDLD  720
IPSSKYHTEE LIFSDSLGGL NHLIASSLDA FQNCSFFGLN KKDSISKVEA RESTSLSDLK  780
ISGGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0702s0020.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443872.10.0TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A2K1XD360.0A0A2K1XD36_POPTR; Uncharacterized protein
STRINGPOPTR_0016s09290.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1