PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0702s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 787aa    MW: 87748.1 Da    PI: 6.7697
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0702s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-094991347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +WT +E+e +  a +q G++ +++I r+++  +   q++++++ +
  SapurV1A.0702s0020.1.p 49 AWTHQEEESFFTALRQVGKN-FEKITRHVQ-SKNKDQVRHYYYRL 91
                            6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-113296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-64494IPR009057Homeodomain-like
PROSITE profilePS5129314.774596IPR017884SANT domain
SMARTSM007171.4E-64694IPR001005SANT/Myb domain
PfamPF002491.5E-64991IPR001005SANT/Myb domain
CDDcd001673.31E-64992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MEAQVSLDSE QQLLQNSSIQ DGDPGVTSST LDCIETQQPE KRPTRQWAAW THQEEESFFT  60
ALRQVGKNFE KITRHVQSKN KDQVRHYYYR LVRRMNKLLG PGMCLDAKDS KDTNAAMLRW  120
WSLLEKYSCK ASKLHLKPRR FKIFIEALEN QLSKDRRKNV RKRSSQGENG SPATPSIITN  180
QNRASVHDNR TVKLVLVDSQ SIQKLGGKGS LKRNVNMGVI RNNNKGDSTA MKPARQRRNP  240
VSSAAYKKWE KAAIAGVSLV ADAAEHLERT ATDKEDEHDK GKKHLDPVEK LHPYFHPLLH  300
CVESNAHTNT KLKLQLFPID DGTRRALEMD KHNPHLELTL STRKKISSVL EHLNRKWGDS  360
TVASGELMLF PYGVNRENLA GYQRWTQDSL VSAADVYFSI GSPPMFRLRY GWFSNVYFAS  420
VTLQAPSTYS CLPDGGNEKK TMDSVSTAEP STSDQFEKPE NPCRDCPTSV NNNHASILHS  480
AGVTNENNEF IATGPRNNLV KSLDPAANIP LHRKETDDRT NTQQLEDVDD LRLSNVNPLS  540
AGEWADSLTN VSVGDLLSEL PHEANHNCIE PPIVQSNQCL QQIPFSCDSF DAAIAAHILR  600
NQGKMGIHFS VASHTSSIWD GEETCDAFAF QKNHSSRKEV TTSSAVTSPR VSKQMDRTSS  660
ITSNSFLEEL PIIEGPIDYP TGGDPLDECP SDSQVVSNQV KDFNELTDIF WPESLGLLDL  720
DIPSSKYHTE ELIFSDSLGG LNHLIASSLD AFQNCSFFGL NKKDSISKVE ARESTSLSDL  780
KISGGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0702s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443872.10.0TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A2K1XD360.0A0A2K1XD36_POPTR; Uncharacterized protein
STRINGPOPTR_0016s09290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1