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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0697s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 406aa MW: 45415.1 Da PI: 7.5358 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.8 | 1e-39 | 136 | 235 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am+++++++++ra+dPv G++++i++lq+++ SapurV1A.0697s0010.1.p 136 ACAACKYQRRKCAPDCILAPYFPHNRQRQFLNAHKLFGVSNISKIIKNLNPPEKDEAMRTIIFQSDVRANDPVGGCYRMIRDLQREI 222 7************************************************************************************** PP DUF260 88 eqlkaelallkee 100 e ++ael+ + ++ SapurV1A.0697s0010.1.p 223 EYSRAELDFVLHQ 235 ******9988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.01 | 135 | 236 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-36 | 136 | 231 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MLDKFCIVGP TKIRGSTAVY KKHLFNASPP NANIYLRNID VGRIPCDFLL RQKGKYVVPD 60 DILLDDVHRS NSKEKRKGLK AAAERKKRGE KPFPNKKTAP APPATHPNSL IISKTTIANS 120 KNMSNISRTG NCTTQACAAC KYQRRKCAPD CILAPYFPHN RQRQFLNAHK LFGVSNISKI 180 IKNLNPPEKD EAMRTIIFQS DVRANDPVGG CYRMIRDLQR EIEYSRAELD FVLHQLAIYR 240 AQAAAQQQTQ LIQAQAAAAA AAAAAAPDQQ TDHDCQGIII TDTFDMYDPV MQYHDQYQQA 300 HQDHQEFVIH NPDNNQLHLQ DQDPANVWAT AATVQDISSL SISSSPNYLD DQVKQAYNGN 360 DQCSTQDDHS KPDVLDANNV NFEPDDQDQL VDMRFVPSTQ LLISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-24 | 137 | 239 | 12 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-24 | 137 | 239 | 12 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0697s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216467 | 0.0 | AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385440.2 | 0.0 | LOB domain-containing protein 20 | ||||
TrEMBL | A0A2K2B189 | 0.0 | A0A2K2B189_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s04520.1 | 1e-157 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-56 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0697s0010.1.p |