PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0690s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18067.9 Da    PI: 6.278
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0690s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.5e-161050242
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             i+n+s r+vtf kR++g+lKK  EL +LC++ ++ iifss
  SapurV1A.0690s0130.1.p 10 LISNESARKVTFRKRKAGLLKKLDELATLCGVFACAIIFSS 50
                            59**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-23160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-21177IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.012150IPR002100Transcription factor, MADS-box
CDDcd002661.77E-23285No hitNo description
PRINTSPR004041.8E-9323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-171150IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGRRKVKHEL ISNESARKVT FRKRKAGLLK KLDELATLCG VFACAIIFSS YDDQPEIWPS  60
PAEALSVLEE LERSPARKPG KYMVDQEVFL STNISKLNQQ LQKQRQKNLR LELELMMAGC  120
VEGMALHDLT YIKNPTESIQ FLEEMIESVT SEIEHAEN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKHELISNESARKVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0690s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376234.12e-99agamous-like MADS-box protein AGL80
TrEMBLB9MWC85e-98B9MWC8_POPTR; M-type family protein
STRINGPOPTR_0013s11210.18e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-33AGAMOUS-like 87