PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0685s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 38709.7 Da PI: 6.515 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.5 | 2.1e-26 | 12 | 132 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatg 87 +G rF+Ptd el++++Lk+k+ g++ + + i+ +d+y+++Pw+Lp ++++ e yfFs+ ++ky ++ r nr+t++g W a+g SapurV1A.0685s0040.1.p 12 VGHRFSPTDVELINYFLKQKLLGNDQLV-SRIPLLDLYQFDPWNLP---YSDDGEGYFFSPLHTKYLgsKNGRINRSTSKGSWLAKG 94 79***********************766.77***************...4577899**********855678*************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 kd e++s+ +ge++g+++++v +++ + vmhey++ SapurV1A.0685s0040.1.p 95 KDYEIKSEfSGEVIGIRRIFVHS--CKKD--GIKYVMHEYSI 132 *******99999********997..3444..3689*****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-31 | 5 | 146 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.409 | 10 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-15 | 12 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MTRMATSFDF NVGHRFSPTD VELINYFLKQ KLLGNDQLVS RIPLLDLYQF DPWNLPYSDD 60 GEGYFFSPLH TKYLGSKNGR INRSTSKGSW LAKGKDYEIK SEFSGEVIGI RRIFVHSCKK 120 DGIKYVMHEY SIPNQSSLVL CKVMKKMPSK RSEGPCKKVK KRKEAADLPL PCNEDHSILS 180 YGVTKKNSEG PCKKVKKTDE KADMPYNKEH ITPEPDEGFE NWITSDKSNL STYNNIIISK 240 DQQAEKSTSD NGGKDRQKTS SASADLDACF TTLEDQVNPE IQPHLQFPGY DQQDYSLYDF 300 TQVDLPLMLP EQVNTYNGPA GTSMSVPMED HLIWLEPLWS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-17 | 6 | 149 | 13 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-17 | 6 | 149 | 13 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-17 | 6 | 149 | 13 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-17 | 6 | 149 | 13 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-17 | 6 | 149 | 16 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-17 | 6 | 149 | 16 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-17 | 6 | 149 | 16 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-17 | 6 | 149 | 16 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-17 | 6 | 149 | 16 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-17 | 6 | 149 | 16 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-17 | 6 | 149 | 16 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-17 | 6 | 149 | 16 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-17 | 6 | 149 | 13 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-17 | 6 | 149 | 13 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 162 | KKVKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0685s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU285971 | 2e-44 | GU285971.1 Populus balsamifera isolate STL13 haplotype B unknown protein gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006371555.1 | 1e-165 | NAC domain-containing protein 91 isoform X4 | ||||
TrEMBL | A0A2K1WS64 | 1e-166 | A0A2K1WS64_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s13130.1 | 1e-165 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23141 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22290.1 | 1e-24 | NAC domain containing protein 89 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0685s0040.1.p |