![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0685s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 24684.1 Da PI: 7.5077 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.8 | 4.6e-09 | 24 | 74 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +++E++RR+++++ +++L +llP+ + ++ + + +A++YIk L+ SapurV1A.0685s0010.1.p 24 TERKIVEKNRRNQMKTLYSNLNSLLPNrN---FKEAQTLPDQIDEAINYIKRLE 74 56789**********************55...77779999***********995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.506 | 21 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-10 | 21 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.87E-4 | 23 | 78 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-9 | 23 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-5 | 24 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0013 | 27 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MVAKTRGPTM ESSSSRSKIS STKTERKIVE KNRRNQMKTL YSNLNSLLPN RNFKEAQTLP 60 DQIDEAINYI KRLEEKLEKS REKRESLKRS RNRTHACTFD PIPPIATSKS PQLKIQEMGS 120 ALEIVLTCGL DNQFVFYEII KILHEEGVEV VSANFQALGD SIFHIVHAQM KESADGFGAA 180 KVTERLDRFI NGSKSEIELD SELWDFAICP DTNWEF* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 84 | 89 | ESLKRS |
2 | 87 | 92 | KRSRNR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0685s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002885.1 | 1e-121 | PREDICTED: transcription factor bHLH118-like isoform X4 | ||||
TrEMBL | U5FEU0 | 1e-115 | U5FEU0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s13090.1 | 1e-116 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-28 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0685s0010.1.p |