PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0681s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 821aa MW: 88982.8 Da PI: 7.8399 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 2.9e-09 | 586 | 623 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + SapurV1A.0681s0020.1.p 586 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 623 664459******************************88 PP | |||||||
2 | BELL | 118.6 | 2.8e-38 | 446 | 517 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+++eVd+rY++y+eq+q+v++sF+ v g g+a pYt+lA+ka+SrhFrcLkda+a q+ SapurV1A.0681s0020.1.p 446 DRIEHQRRKVKLLSMIDEVDRRYNHYCEQMQMVVNSFDLVLGFGAAVPYTALAQKAMSRHFRCLKDAVAAQL 517 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.3E-80 | 379 | 515 | IPR006563 | POX domain |
Pfam | PF07526 | 6.5E-51 | 384 | 514 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 564 | 627 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.53E-13 | 567 | 628 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 567 | 631 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.85E-17 | 569 | 634 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 570 | 633 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.2E-18 | 584 | 623 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 821 aa Download sequence Send to blast |
MGIATAPPFP PILPQYSKTH HQLSSPILQN TKSSTSNYNS MSQDYHQGIF SFSNGGFERP 60 SVSHQEHVQQ QQHHIAQQIR RDKLRVQSGY EQPPPALLGI EEEESGGLPV YETAGMLSEM 120 FNFPPAGGPA AAVDLLDQPL RSNYRTQTRQ QQPVTTNDWY NSNNRQGMVV GGLGIGNSKN 180 HSNTDSRESL ARHQHQISGI NADSAAAMQL FLMNPSQPRS PQSPSLSHHQ PPPSTSSTLH 240 MLLPNPSSSL QGFSTVSGGG YGATSVISPP QFTWVPDSSH EGGNTGAPLS NPAEISGVVE 300 AQGLSLSLSS SLQHLEAAKA EELRMGDSGL LYYNQGAGGS SSSTYYKNLG GHQHHQALHL 360 QGGMGQNHHQ VHAGFGSSLG VVKVLRNSKY VKAAQELLEE FCSVGRGQFK KSKFGRQNTN 420 PSSNNNPGGG GSSSSTKDFP PLSAADRIEH QRRKVKLLSM IDEVDRRYNH YCEQMQMVVN 480 SFDLVLGFGA AVPYTALAQK AMSRHFRCLK DAVAAQLKHS CELLGDKDGA GTSGITKGET 540 PRLKLLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKH 600 LLARQTGLSR NQVSNWFINA RVRLWKPMVE EMYQQESKEE EPGADDRERK QASNNNGVAQ 660 TPTPTTTTTG SSAPAATATT MPSGKRSEIN ASENDPSLLA INRQCFSENQ TKLSTSSSTT 720 TTTIITPTNI TSTAEVAPPS HAGQPFHDFA DDTCRHGSMI TADYGTTSSN ANAGAEHIGS 780 TLLRFGTTTA GDVSLTLGLR HAGKMPEKSP PFSVRDFGGC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 573 | 631 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 573 | 631 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-16 | 573 | 631 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 573 | 631 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-16 | 573 | 630 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 573 | 630 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0681s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU227798 | 0.0 | CU227798.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025689.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Swissprot | Q9SW80 | 0.0 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A2K1ZNK1 | 0.0 | A0A2K1ZNK1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s12170.2 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3524 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-149 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0681s0020.1.p |
Publications ? help Back to Top | |||
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