PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0680s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GATA | ||||||||
Protein Properties | Length: 289aa MW: 31716.7 Da PI: 8.6432 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.1 | 2.1e-17 | 220 | 254 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l SapurV1A.0680s0040.1.p 220 CAHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 254 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.9E-14 | 214 | 268 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.477 | 214 | 250 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-14 | 215 | 278 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-13 | 218 | 252 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.05E-10 | 219 | 266 | No hit | No description |
Pfam | PF00320 | 4.1E-15 | 220 | 254 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 220 | 245 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MDICRNVTLS AEYHQQEKVL ASPPPCPKLA AAASTAATLP LDDLFSAQNT EVDFSLEWLS 60 VFVEDCLSST GNCLPAPTVE AQKPNTEDTP PKTWKQKPQD QEDPSPLKKP VIPGKSRSKR 120 RRLSGDKTRN PLTSWCSTSQ ALNNFSSSDP PLLQQTYWLA DSELIMPRKE DSSSTGMDSE 180 VREESRSDQG KAGAAAGSGG GRDRLKVVES SNGQQQPRRC AHCLAQRTPQ WRAGPLGPKT 240 LCNACGVRYK SGRLLPEYRP AKSPTFVSFL HSNSHKKVME MRMASDQW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 122 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0680s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011034353.1 | 1e-168 | PREDICTED: GATA transcription factor 5-like | ||||
TrEMBL | A0A2K1Y1N9 | 1e-166 | A0A2K1Y1N9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s05610.1 | 1e-169 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 1e-34 | GATA transcription factor 4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0680s0040.1.p |