PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0666s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 724aa    MW: 79437.8 Da    PI: 4.2401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0666s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.53.3e-50101411127
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+di+k+ePwdLp  + +k+++ ew+fF++ d+ky++g+r+nrat++gyWka
  SapurV1A.0666s0060.1.p  10 LPLGFRFRPTDEELINHYLRLKINGRDSEV-EVIPEIDICKWEPWDLPglSVIKTGDPEWFFFCPLDRKYPNGHRSNRATNAGYWKA 95 
                             699************************999.99***************6448888999***************************** PP

                     NAM  86 tgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                             tgkd++++s+    +++l+g+kktLvf++grap+g +t+W++h+yr
  SapurV1A.0666s0060.1.p  96 TGKDRKITSRksagNTTLIGMKKTLVFHRGRAPNGDRTNWIVHDYR 141
                             *********977766677***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-574165IPR003441NAC domain
PROSITE profilePS5100554.23710165IPR003441NAC domain
PfamPF023652.1E-2411141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MVAMVSVDSL PLGFRFRPTD EELINHYLRL KINGRDSEVE VIPEIDICKW EPWDLPGLSV  60
IKTGDPEWFF FCPLDRKYPN GHRSNRATNA GYWKATGKDR KITSRKSAGN TTLIGMKKTL  120
VFHRGRAPNG DRTNWIVHDY RPTEKDLDGT GPGQGAFVLS RLFRKPEERS SVVKYDEIEQ  180
NGYSPTAAKS SPDDASSDLV QETATSDMNS GMQLEDTKML SESDNMTSNA VVPIDSCSNS  240
RATSDFEDQF PEATAVEFFF QSYLPPDENS PLLEPMSDEL DCKVFSPVRS QIPAELGYFM  300
DSLYASDFGN NQNGYSFQDG TSEQDVSLTE LLDDFINNQD DCSGEETSSW NTLGFGSETQ  360
LCGQIPSGNF HVKDHGVYNG MAQELHASHT GARVWPDDQF DSDELLQMQN ALSTCRTPAP  420
VTDGEIGRGN IGHFGNNLVG QDASPVNSSI SSFDVLDSME EPTSQMTSVD HSNGVSGTGI  480
KIRTRQPQVR RHSDNFVSQG SASRRLRLQV TRSAGNRKVN DATHVEDEDE VKSAVTEATG  540
EAEKQASTVD EDEDEVQSAV TEATGDAEKQ ATTVDEDEDE DEVQSAVTED TGDAEKQATT  600
VDEDEDEDEV QSAVTEVTGD AEKQATTADD LQNEIPIVIS KANWEIAEES SSNLRLRVKR  660
EAGPGSGQIA SSAFPAAHHG HKSLSIYVSI FLLLILFIAF AGIWRSPKTV KLQRLHGGAI  720
DDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-42916519168NAC domain-containing protein 19
3swm_B4e-42916519168NAC domain-containing protein 19
3swm_C4e-42916519168NAC domain-containing protein 19
3swm_D4e-42916519168NAC domain-containing protein 19
3swp_A4e-42916519168NAC domain-containing protein 19
3swp_B4e-42916519168NAC domain-containing protein 19
3swp_C4e-42916519168NAC domain-containing protein 19
3swp_D4e-42916519168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0666s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377880.20.0protein NTM1-like 9 isoform X1
TrEMBLA0A2I4KK920.0A0A2I4KK92_POPTR; NAC family protein
STRINGPOPTR_0011s15230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-123NAC 014