PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0662s0040.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 609aa MW: 68028.6 Da PI: 4.623

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0662s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.5	1.1e-52	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lp GfrF+P+d elv++yLk k++g++ ++ +vi+e+d++k+ePwdLp + +++e+ ew+fF++ d+ky++g+r+nrat++gyWka SapurV1A.0662s0040.1.p 11 LPLGFRFRPSDAELVNYYLKYKINGRDDKV-KVIREIDVCKWEPWDLPglSIIENEDPEWFFFCPLDRKYPNGSRQNRATSAGYWKA 96 699**********************999.99***********6336777888************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd++++s +++l+g+kktLvfy+grapkg++t+Wvmheyr SapurV1A.0662s0040.1.p 97 TGKDRKIKS-GQSLIGMKKTLVFYTGRAPKGKRTNWVMHEYRT 138 *****.999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-60	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	56.452	11	161	IPR003441	NAC domain
Pfam	PF02365	3.8E-27	12	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MAVLSLNLNS LPLGFRFRPS DAELVNYYLK YKINGRDDKV KVIREIDVCK WEPWDLPGLS 60 IIENEDPEWF FFCPLDRKYP NGSRQNRATS AGYWKATGKD RKIKSGQSLI GMKKTLVFYT 120 GRAPKGKRTN WVMHEYRTTE EEFDGTKPGQ SAFVLCRLFK KQDESIERPN SDEAETTVSS 180 PTTALSSPEV TQSDQLLTEA SPQNATISGV VAPVEFPSCS VGVSDGGDQT VDLPASPEEE 240 LNLEDALNWL FDSPPKAHYE LFPPVHEQVQ EALGSSSMFY HGNNELSSSN RGMQSHNGGN 300 ETDADTTEFI NSILEQPDEH LYEVPSVQDI SSFPSESLFS GSLLNVVNDT ESYSGSDFDL 360 EQIRIEQGFQ GAAFPEGNID EMPSSTLLYD RNAHQQPIYR GGLQNGSYTR QSLASTSTMD 420 QLNNLNNPSN DMNEGGGGDI DWDGIRIRVH NPQNQRFGRN LNTQGDAPRR LHLQRKLQVQ 480 PVKFSTKSED FSFGEELESE CIVTKEIKVS ETNAMDEGSY TNAMDERLKP TLVKVSETNK 540 FSEELIPNNG TAVKNNRSMF SKVSFMFSKA SSACNSTWPI TMFRVAVLAV LFAVLVRRCC 600 TYFFLDTA*

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MAVLSLNLNS LPLGFRFRPS DAELVNYYLK YKINGRDDKV KVIREIDVCK WEPWDLPGLS  60
IIENEDPEWF FFCPLDRKYP NGSRQNRATS AGYWKATGKD RKIKSGQSLI GMKKTLVFYT  120
GRAPKGKRTN WVMHEYRTTE EEFDGTKPGQ SAFVLCRLFK KQDESIERPN SDEAETTVSS  180
PTTALSSPEV TQSDQLLTEA SPQNATISGV VAPVEFPSCS VGVSDGGDQT VDLPASPEEE  240
LNLEDALNWL FDSPPKAHYE LFPPVHEQVQ EALGSSSMFY HGNNELSSSN RGMQSHNGGN  300
ETDADTTEFI NSILEQPDEH LYEVPSVQDI SSFPSESLFS GSLLNVVNDT ESYSGSDFDL  360
EQIRIEQGFQ GAAFPEGNID EMPSSTLLYD RNAHQQPIYR GGLQNGSYTR QSLASTSTMD  420
QLNNLNNPSN DMNEGGGGDI DWDGIRIRVH NPQNQRFGRN LNTQGDAPRR LHLQRKLQVQ  480
PVKFSTKSED FSFGEELESE CIVTKEIKVS ETNAMDEGSY TNAMDERLKP TLVKVSETNK  540
FSEELIPNNG TAVKNNRSMF SKVSFMFSKA SSACNSTWPI TMFRVAVLAV LFAVLVRRCC  600
TYFFLDTA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	10	165	16	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	10	165	16	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	10	165	16	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	10	165	16	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	10	165	19	172	NAC domain-containing protein 19
3swm_B	1e-45	10	165	19	172	NAC domain-containing protein 19
3swm_C	1e-45	10	165	19	172	NAC domain-containing protein 19
3swm_D	1e-45	10	165	19	172	NAC domain-containing protein 19
3swp_A	1e-45	10	165	19	172	NAC domain-containing protein 19
3swp_B	1e-45	10	165	19	172	NAC domain-containing protein 19
3swp_C	1e-45	10	165	19	172	NAC domain-containing protein 19
3swp_D	1e-45	10	165	19	172	NAC domain-containing protein 19
4dul_A	1e-45	10	165	16	169	NAC domain-containing protein 19
4dul_B	1e-45	10	165	16	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250\|UniProtKB:Q9SCK6, ECO:0000269\|PubMed:11041886, ECO:0000269\|PubMed:15629774, ECO:0000269\|PubMed:18785827, ECO:0000269\|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269\|PubMed:11041886, ECO:0000269\|PubMed:15629774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0662s0040.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269\|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269\|PubMed:24418554}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002317831.3	0.0	NAC domain-containing protein 91
Swissprot	Q9LKG8	2e-95	NAC91_ARATH; NAC domain-containing protein 91
TrEMBL	A0A2K1Y6Z1	0.0	A0A2K1Y6Z1_POPTR; Uncharacterized protein
STRING	POPTR_0012s00760.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5551	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	1e-97	TCV-interacting protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0662s0040.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ben Daniel BH, et al. Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens. Physiol Plant, 2016. 157(4): p. 422-41 [PMID:26923089] Li Y, et al. The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains. Virus Res., 2016. 222: p. 94-105 [PMID:27288723]