PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0658s0070.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 447aa MW: 49054.2 Da PI: 7.0109

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0658s0070.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16	2.2e-05	341	375	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +++ L++l+ + +K + a++L +A+eYIk L SapurV1A.0658s0070.2.p 341 KMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 375 6778999999999998.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.687	326	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.66E-6	336	380	No hit	No description
SuperFamily	SSF47459	1.13E-10	336	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-9	341	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MADEYTSTNW WDSSSSSRNK FDSTGSSSTA SGLNSLRSFA WPTEMADIKG RSSMETASVS 60 DSSAAFHDSQ KLQQGHDSSA DLHMMGLGLS SQAMDWNQAL FRGDKSESSF RSTLQDNLSS 120 STNYQQENGI GSSQAQWRER VFTGDSSMTE FKQMNRGFSI DQPQFSPHGN SGDSTVSCQG 180 LQSTFPMDSS SIYGTAATML QGLLISDNQA QHCSFENRPM SYGYGANYGI STNEFLPSLP 240 KGSQFFRNSP PKQLSHNQLQ FSNNTPFWNA SASAMNDVRP SCFPLMQPQF ATSNFDEKPK 300 NISEVRDSNI VVKKSGSETA TKRPRNETPS PLPSLKVRKV KMGDRITALQ QLVSPFGKTD 360 TASVLSEAIE YIKFLHEQVS VLSTPYMKSG APILHQQGSD KAKDLQGQKQ DLRSRGLCLV 420 PVSSTFPVTH ETAVDFWTPT FGGTYR*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MADEYTSTNW WDSSSSSRNK FDSTGSSSTA SGLNSLRSFA WPTEMADIKG RSSMETASVS  60
DSSAAFHDSQ KLQQGHDSSA DLHMMGLGLS SQAMDWNQAL FRGDKSESSF RSTLQDNLSS  120
STNYQQENGI GSSQAQWRER VFTGDSSMTE FKQMNRGFSI DQPQFSPHGN SGDSTVSCQG  180
LQSTFPMDSS SIYGTAATML QGLLISDNQA QHCSFENRPM SYGYGANYGI STNEFLPSLP  240
KGSQFFRNSP PKQLSHNQLQ FSNNTPFWNA SASAMNDVRP SCFPLMQPQF ATSNFDEKPK  300
NISEVRDSNI VVKKSGSETA TKRPRNETPS PLPSLKVRKV KMGDRITALQ QLVSPFGKTD  360
TASVLSEAIE YIKFLHEQVS VLSTPYMKSG APILHQQGSD KAKDLQGQKQ DLRSRGLCLV  420
PVSSTFPVTH ETAVDFWTPT FGGTYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0658s0070.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024445198.1	0.0	transcription factor bHLH123 isoform X2
Swissprot	Q8GXT3	5e-88	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2K2CBQ9	0.0	A0A2K2CBQ9_POPTR; Uncharacterized protein
STRING	POPTR_0001s43950.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-90	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0658s0070.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]