PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0658s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 448aa MW: 49182.3 Da PI: 7.0109 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16 | 2.2e-05 | 342 | 376 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +++ L++l+ + +K + a++L +A+eYIk L SapurV1A.0658s0070.1.p 342 KMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 376 6778999999999998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.687 | 327 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.13E-10 | 337 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.69E-6 | 337 | 381 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.6E-9 | 342 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MADEYTSTNW WDSSSSSRNK FDSTGSSSTA SGLNSLRSFA WPTEMADIKG RSSMETASVS 60 DSSAAFHDSQ KLQQGHDSSA DLHMMGLGLS SQAMDWNQAL FRGDKSESSF RSTLQDNLSS 120 STNYQQENGI GSSQAQWRER VFTGDSSMTE FKQMNRGFSI DQPQFSPHGN SGDSTVSCQG 180 LQSTFPMDSS SIYGTAATML QGLLISDNQA QHCSFENRPM SYGYGANYGI STNEFLPSLP 240 KGSQFFRNSP PKQLSHNQLQ FSNNTPFWNA SASAMNDVRP SCFPLMQPQF ATSNFDEKPK 300 QNISEVRDSN IVVKKSGSET ATKRPRNETP SPLPSLKVRK VKMGDRITAL QQLVSPFGKT 360 DTASVLSEAI EYIKFLHEQV SVLSTPYMKS GAPILHQQGS DKAKDLQGQK QDLRSRGLCL 420 VPVSSTFPVT HETAVDFWTP TFGGTYR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0658s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024445192.1 | 0.0 | transcription factor bHLH123 isoform X1 | ||||
Swissprot | Q8GXT3 | 2e-86 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A2K2CBQ9 | 0.0 | A0A2K2CBQ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s43950.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 3e-88 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0658s0070.1.p |
Publications ? help Back to Top | |||
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