PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0655s0060.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 358aa    MW: 40972 Da    PI: 4.9338
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0655s0060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix103.61.4e-32194279187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k+e+  Li++r+++e + +++  k+plWee+s  m+  g+ rs+k+Ckekwen+nk++k++ke++kkr +++s+tcpyf+ql+a
  SapurV1A.0655s0060.2.p 194 RWPKEEIESLIKIRTYLEFQCQENGPKGPLWEEISTSMKNLGYDRSAKRCKEKWENMNKYFKRVKESNKKR-PGDSKTCPYFQQLDA 279
                             8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.631187251IPR017877Myb-like domain
SuperFamilySSF466897.47E-5190265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-4190251IPR009057Homeodomain-like
PfamPF138373.2E-23193280No hitNo description
CDDcd122032.93E-26193258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MPSASVNPVS FIPNIAPCSI QSPSTNCTDA TSTSTASTSS EESDGTRKKK QKLADFFERL  60
MKEVVEKQEN LQNKFLEAIE KCEQERITRE EAWKMQELDR IKREHELLVH ERAISAAKDA  120
AVLAFLQKFS EQGIPVQLPD NPTVPMKFPD NQTVPVQFSV SARLPKDQAV PVENAEKTHE  180
NNSLESFVNM NSSRWPKEEI ESLIKIRTYL EFQCQENGPK GPLWEEISTS MKNLGYDRSA  240
KRCKEKWENM NKYFKRVKES NKKRPGDSKT CPYFQQLDAL YREKTRRVDN PGYELKPEEL  300
LMHMMGGQGD QQLPDSATTE DRESENVDQI QEDYRGKEDG DGYRIVAIDP SSMEIME*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0655s0060.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2113060.0AC211306.1 Populus trichocarpa clone POP004-K18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046366.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391176e-77TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2K1WMS90.0A0A2K1WMS9_POPTR; Uncharacterized protein
STRINGPOPTR_0019s02650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.17e-79Trihelix family protein