PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0623s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 276aa    MW: 30040.9 Da    PI: 4.8781
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0623s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.4e-36101022103
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k++++++d+++++++sw+e+g++fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++
  SapurV1A.0623s0030.1.p  10 FLMKTFQLVDDPSTDDVLSWNESGTTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANENFRR 87 
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkkse 103
                             gkkell  i+r+k++
  SapurV1A.0623s0030.1.p  88 GKKELLAGIRRRKTT 102
                             ************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.3E-38293IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.45E-33599IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.9E-58699IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAQRSSPAPF LMKTFQLVDD PSTDDVLSWN ESGTTFVVWK TADFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKVVPDKWEF ANENFRRGKK ELLAGIRRRK TTAATQTSPA GKSGGASSSS  120
NSGEDLGSTS TSSPDSKNPG SVETAATQVA DLSIENEQLK KDNDVLSDEL SQAKKQCEDL  180
INFLREYVKV SPDQINRIIG CGGSTCNGGA AVGDNQSEDD DDDENTSDED DHDTDGGEGL  240
KLFGVLLKCQ NKKKRGRDEK TGFGGPRAKE IKSCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-26110411125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0623s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140040.0KP014004.1 Populus simonii heat shock transcription factor B1 (HsfB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461200.11e-150heat shock factor protein HSF24
SwissprotP223351e-104HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A1L6K4J31e-150A0A1L6K4J3_POPTO; Heat shock transcription factor B1
STRINGcassava4.1_013185m1e-127(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-79heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]