PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0614s0070.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 378aa    MW: 40833.6 Da    PI: 4.7749
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0614s0070.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.7e-10107146344
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                             +WT+eE + l++ v ++G + W+++a+ +  ++t  +c+s++
  SapurV1A.0614s0070.2.p 107 AWTEEETLHLLESVLRHGDD-WDLVAQNVK-TKTKLDCISKL 146
                             6*****************88.********9.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129314.968103154IPR017884SANT domain
SMARTSM007175.1E-6104152IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-8105155IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-6106143IPR009057Homeodomain-like
PfamPF002497.3E-10107146IPR001005SANT/Myb domain
CDDcd001672.56E-6107145No hitNo description
PfamPF164955.1E-20281355IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MPDKLKPISV GSVQSSAGGS GGGGGSGLKL PPLASYSDVF GELAGKKKGV ICGNCGGSCD  60
SGQYDYSKGD YVICQKCFND GTYGENKSKD DFKLNDSAEN NVSNAAAWTE EETLHLLESV  120
LRHGDDWDLV AQNVKTKTKL DCISKLIELP FGDLILSSAY GKANSSGQSG STNNSKPVPA  180
APSEHQDDTK YEDQLLEQMN ANEENGDIMD DGPLLKRRHI TSISDAGGSL MKQLSPSVYI  240
GNIYYQSLGL FTCLSLTGTE EAPAWQNDIP LSLRLRAAVS TSLGAAAAHA KLLADQEDRE  300
VENLMATIVE TQMKKLHHKI KHFDDLELIM EKEYAELDEL TESLTEERID VLQRAIRAGI  360
SKSRDHASIK FHLSNVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0614s0070.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045323e-31AP004532.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT09L22, TM0063, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690143.11e-139SWI/SNF complex subunit SWI3A isoform X3
TrEMBLA0A2C9VQB41e-136A0A2C9VQB4_MANES; Uncharacterized protein
TrEMBLA0A2K1XKV51e-137A0A2K1XKV5_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11250.11e-139(Populus trichocarpa)