PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0614s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 379aa    MW: 40961.8 Da    PI: 4.7749
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0614s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.7e-10108147344
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                             +WT+eE + l++ v ++G + W+++a+ +  ++t  +c+s++
  SapurV1A.0614s0070.1.p 108 AWTEEETLHLLESVLRHGDD-WDLVAQNVK-TKTKLDCISKL 147
                             6*****************88.********9.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129314.968104155IPR017884SANT domain
SMARTSM007175.1E-6105153IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-8106156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-6107144IPR009057Homeodomain-like
CDDcd001672.57E-6108146No hitNo description
PfamPF002497.3E-10108147IPR001005SANT/Myb domain
PfamPF164955.1E-20282356IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MPDKLKPISV GSVQSSAGGS GGGGGSGLKL PPLASYSDVF GELAGKKKGV ICGNCGGSCD  60
SGQYDYSKQG DYVICQKCFN DGTYGENKSK DDFKLNDSAE NNVSNAAAWT EEETLHLLES  120
VLRHGDDWDL VAQNVKTKTK LDCISKLIEL PFGDLILSSA YGKANSSGQS GSTNNSKPVP  180
AAPSEHQDDT KYEDQLLEQM NANEENGDIM DDGPLLKRRH ITSISDAGGS LMKQLSPSVY  240
IGNIYYQSLG LFTCLSLTGT EEAPAWQNDI PLSLRLRAAV STSLGAAAAH AKLLADQEDR  300
EVENLMATIV ETQMKKLHHK IKHFDDLELI MEKEYAELDE LTESLTEERI DVLQRAIRAG  360
ISKSRDHASI KFHLSNVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0614s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045323e-31AP004532.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT09L22, TM0063, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690143.11e-137SWI/SNF complex subunit SWI3A isoform X3
TrEMBLA0A067JIC81e-135A0A067JIC8_JATCU; Uncharacterized protein
STRINGPOPTR_0015s11250.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF981622