PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0612s0160.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 464aa MW: 51370 Da PI: 6.6957

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0612s0160.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.9e-12	262	308	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h E+rRR+++N++f L++++P+ + K++K+++L +++Y+++L+ SapurV1A.0612s0160.3.p 262 SHVLSEKRRREKLNKSFMILKSIVPSiS------KVDKVSVLDGTIQYLQELE 308 79999*******************66......**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.548	258	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-16	261	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-10	262	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-16	262	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.74E-12	262	312	No hit	No description
SMART	SM00353	9.4E-15	264	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd14688	0.00741	302	339	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MSGVVELGVS EQVLEDPSLI QHIKTSFLEI PCTVAAKHSS AKSDKELASA TLNREIQDTK 60 PVSGIRRGEL DIVSPNDNSN DQAATDSTMA EGLNGGTSRV QSWEFMDDDF NNCVHHPLNS 120 SDCVCQTIVD PVKLVPVLKD GKVNDQSLQD VQDCNHKKLT ASKLQSDDLH YQSVLSCLSK 180 TSHPLILRPN VQYCHQEPSF VSWKKAGLMH SQKLKSGNPQ KLLKKILFEV PRIHVDGLLD 240 SPENNRDKVV GGRPDADEID ASHVLSEKRR REKLNKSFMI LKSIVPSISK VDKVSVLDGT 300 IQYLQELERK VEELESRREL LEAITRRKPQ DTVERTSDNY GSNKIGNGKN SLTNKRKAPD 360 IDEMESDTNH KISKDGSADH TIVSMNKEDV LIEIKCLWRE GILLELMDAA SHLHLDSHSV 420 ESSTTDGILS LTIKSKHKGL NAASVGTIKH AFQIVAGNLF SNR*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MSGVVELGVS EQVLEDPSLI QHIKTSFLEI PCTVAAKHSS AKSDKELASA TLNREIQDTK  60
PVSGIRRGEL DIVSPNDNSN DQAATDSTMA EGLNGGTSRV QSWEFMDDDF NNCVHHPLNS  120
SDCVCQTIVD PVKLVPVLKD GKVNDQSLQD VQDCNHKKLT ASKLQSDDLH YQSVLSCLSK  180
TSHPLILRPN VQYCHQEPSF VSWKKAGLMH SQKLKSGNPQ KLLKKILFEV PRIHVDGLLD  240
SPENNRDKVV GGRPDADEID ASHVLSEKRR REKLNKSFMI LKSIVPSISK VDKVSVLDGT  300
IQYLQELERK VEELESRREL LEAITRRKPQ DTVERTSDNY GSNKIGNGKN SLTNKRKAPD  360
IDEMESDTNH KISKDGSADH TIVSMNKEDV LIEIKCLWRE GILLELMDAA SHLHLDSHSV  420
ESSTTDGILS LTIKSKHKGL NAASVGTIKH AFQIVAGNLF SNR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0612s0160.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011022678.1	0.0	PREDICTED: transcription factor GLABRA 3 isoform X1
TrEMBL	A0A2K2B670	0.0	A0A2K2B670_POPTR; Uncharacterized protein
STRING	POPTR_0003s12810.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-93	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0612s0160.3.p