PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0608s0210.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 346aa    MW: 38556.1 Da    PI: 5.9806
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0608s0210.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161462148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
  SapurV1A.0608s0210.2.p 14 KGPWSPEEDAILKTYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                            79*********************************************97 PP
2Myb_DNA-binding383.7e-1269111246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g +++eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
  SapurV1A.0608s0210.2.p  69 GGFSEEEDDIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                             569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.181962IPR017930Myb domain
SuperFamilySSF466891.34E-2611109IPR009057Homeodomain-like
SMARTSM007175.7E-131364IPR001005SANT/Myb domain
PfamPF002492.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-241569IPR009057Homeodomain-like
CDDcd001674.21E-101662No hitNo description
PROSITE profilePS5129421.45363117IPR017930Myb domain
SMARTSM007179.9E-1167115IPR001005SANT/Myb domain
PfamPF002499.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2370117IPR009057Homeodomain-like
CDDcd001673.39E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAILKTYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIRHGG FSEEEDDIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRREQADRRA SLKQQIMTKR EINESFMVPG TIPHQESPYW PDVQAIVMNQ NQDSHLMDQE  180
SIRDLLAKLG GRFYDDNQGP NLSTKFNNYS LEGSSRQDHQ VLYTNSVDML SSSAPMRSMD  240
STCCSQFPNS NYSGPNMSQD GLESLLVELG GLACSNPQHV EGLESFYGMD MAASGSTGAS  300
SAESNSWGNI SSLGYPQLVS DYETCLQSMP QDSSFEDSSF FGRPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0608s0210.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031333.10.0PREDICTED: transcription factor RAX3 isoform X2
SwissprotQ9M2Y96e-88RAX3_ARATH; Transcription factor RAX3
TrEMBLB9HFU00.0B9HFU0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14630.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.19e-82myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]