PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0602s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 288aa    MW: 32278.5 Da    PI: 4.5186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0602s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.15e-06163207655
                             HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             +++ r RR++i ++  eL +l+P  +      K++ ae+ + A +Y+k Lq
  SapurV1A.0602s0120.1.p 163 SIAARERRRKITEKTLELAKLVPGgN------KMNTAEMFQAASKYVKFLQ 207
                             67889******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.89157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.05E-8160210No hitNo description
Gene3DG3DSA:4.10.280.102.1E-9161213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-10161215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-8163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MALSFCSNMG SSLHHHNLPE IGNHELFGCN DSLMFSDSFI NPLYEVEDQL FYSDNYTNLL  60
PFFSSPSDNL SSLSPEIFPP EDLESYACPK RQKLYTDHFN TDFATGFFEG HLPGPPESLP  120
EIPVPVPVPE PKFQVPTTFN AWRNESVMNS KKQSSGVGLS AQSIAARERR RKITEKTLEL  180
AKLVPGGNKM NTAEMFQAAS KYVKFLQAQI GILELMGTAQ EDKVALHAQE LQTLVTSPTI  240
QEKLYLEQKC LVPRDFVQTI ADDCEIQAKP LIVEEIDHEF LGEQFLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0602s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6519060.0JN651906.1 Populus koreana abscisic acid-responsive protein bHLH2 (bHLH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452005.11e-169transcription factor bHLH52 isoform X1
TrEMBLA0A1I9W0961e-170A0A1I9W096_POPTO; Basic helix-loop-helix DNA-binding superfamily protein
STRINGPOPTR_0001s46530.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.19e-30bHLH family protein