PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0597s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 288aa    MW: 31453.2 Da    PI: 8.0465
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0597s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.54e-201257147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  SapurV1A.0597s0060.1.p 12 KGPWSPEEDEALQKLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                            79******************************.***********985 PP
2Myb_DNA-binding52.11.5e-1666108347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++T+eEde + +a++++G++ W+tIar +  gRt++ +k++w++ 
  SapurV1A.0597s0060.1.p  66 PFTPEEDETITRAHARFGNK-WATIARLLY-GRTDNAIKNHWNST 108
                             89******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.412762IPR017930Myb domain
SuperFamilySSF466897.49E-339105IPR009057Homeodomain-like
SMARTSM007176.4E-181160IPR001005SANT/Myb domain
PfamPF002491.2E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-261364IPR009057Homeodomain-like
CDDcd001672.45E-171456No hitNo description
SMARTSM007174.9E-1363111IPR001005SANT/Myb domain
PROSITE profilePS5129419.52464113IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2365112IPR009057Homeodomain-like
PfamPF002491.2E-1366108IPR001005SANT/Myb domain
CDDcd001678.98E-1166109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAITRKEMDR IKGPWSPEED EALQKLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRPFTPE EDETITRAHA RFGNKWATIA RLLYGRTDNA IKNHWNSTLK RKCSSMAEDG  120
NFCNLEGYDG NLDGDNTQPL KRSVSAGSVV MPPVETTSSC DNNNDPPTSL SLSLPGADSS  180
EVSDQVAEQA QLPKSNTVTP LLTGRNAPAQ ESSPEVGGRP GCGYAGFSTE LMTVMKEMIR  240
NEVRNYMIEQ SGGGGMCYQG MSGEGFRSVA VNNSAGLVKL SGEKWKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-41111133105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-401111357159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-401111357159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-41111133105C-Myb DNA-Binding Domain
1msf_C3e-41111133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0597s0060.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2030760.0AC203076.1 Populus trichocarpa clone Pop1-41F08, complete sequence.
GenBankAC2105080.0AC210508.1 Populus trichocarpa clone POP049-N18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006987.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231608e-88MYB73_ARATH; Transcription factor MYB73
TrEMBLB9HH801e-178B9HH80_POPTR; MYB family protein
STRINGPOPTR_0007s10490.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-90myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]