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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0586s0180.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 608aa MW: 67856.2 Da PI: 5.1797 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87 | 3.4e-27 | 20 | 142 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeek.ewyfFskrdkkyatgkrknratksgyWka 85 Gf+F+P+ eel ++yL +k++g+ ++ +++v+++++ePwdLp k ++ + + wyfF++rd k gk ++r+tk+g Wk SapurV1A.0586s0180.1.p 20 EYGFKFQPSVEELFSKYLVPKTRGDIMKG-FPMEDVNLCEHEPWDLPgKsIINVDGQvAWYFFCPRDLK---GKLQRRKTKAGNWKP 102 57************************999.56***************644334444459*******996...6789999******** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 t ++k++l++ +g+++g+ +tL fy+ +++t W++ e+ l SapurV1A.0586s0180.1.p 103 TSNTKSILAEgTGNEIGVMRTLRFYE----GAVRTGWMIYEFDL 142 ********9978889**********5....456899*****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-31 | 9 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.666 | 19 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-17 | 21 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MENDLLSVMA NPIALLLLME YGFKFQPSVE ELFSKYLVPK TRGDIMKGFP MEDVNLCEHE 60 PWDLPGKSII NVDGQVAWYF FCPRDLKGKL QRRKTKAGNW KPTSNTKSIL AEGTGNEIGV 120 MRTLRFYEGA VRTGWMIYEF DLISEPSQFQ KGQYVLCKLE SDSEGVKSKK RKRSHRIAPV 180 SRSEVEPSQS MDSDSQNINP SEMAVNSPCD ESGLSHHVGL QFGNQNSGEL MNSSARQFSE 240 FSHHRTSEFR NQIPDNPMSD LVHDGSGSSH STVFNRENQY WNQPTVDSAY NGSESPCMAF 300 YSETQTPNEL PAVDSAYNVT RNPGMAFDLA NQNPNVLAAD SASNFVSESR HMTFDLANQT 360 PSVLLTADNS ASNVSGSHYM AFDLANKNLC NSISILASEN SLMASRGSEI LEPPFPFPLE 420 GESGNSMVMP CSFINQSTYD KSEPSSLIPF DFDYQNPSKE IDISAFDEGV WSNITATPPD 480 FVIQNPCKKP DMSAALEEVY SSYSEPSFSY SYLADLSLPE VRAMDCLVFF LIFLPGFEEQ 540 TRSLFLIYMI LPAGKPWTSR DGRVFRARKH PQPCTFPASC VHGGKPLLHG RPLISYLLYN 600 KKTIHSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 9e-17 | 22 | 159 | 23 | 165 | NAC domain-containing protein 19 |
3swm_B | 9e-17 | 22 | 159 | 23 | 165 | NAC domain-containing protein 19 |
3swm_C | 9e-17 | 22 | 159 | 23 | 165 | NAC domain-containing protein 19 |
3swm_D | 9e-17 | 22 | 159 | 23 | 165 | NAC domain-containing protein 19 |
3swp_A | 9e-17 | 22 | 159 | 23 | 165 | NAC domain-containing protein 19 |
3swp_B | 9e-17 | 22 | 159 | 23 | 165 | NAC domain-containing protein 19 |
3swp_C | 9e-17 | 22 | 159 | 23 | 165 | NAC domain-containing protein 19 |
3swp_D | 9e-17 | 22 | 159 | 23 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 173 | KKRKRS |
2 | 169 | 174 | KRKRSH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0586s0180.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035214.1 | 0.0 | PREDICTED: NAC domain-containing protein 45-like isoform X2 | ||||
TrEMBL | A0A2K1XRZ3 | 0.0 | A0A2K1XRZ3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s07220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19008 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 4e-25 | NAC 014 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0586s0180.1.p |