PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0584s0010.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | E2F/DP | ||||||||
Protein Properties | Length: 255aa MW: 27629.8 Da PI: 8.4406 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.4 | 1e-27 | 98 | 180 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg SapurV1A.0584s0010.6.p 98 SGRGLRQFSMK---VCEKVESkGTTTYNEVADELVAEfadptnsvstpdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 180 689********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 1.5E-100 | 1 | 252 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 6.2E-46 | 94 | 186 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.6E-35 | 97 | 180 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 8.8E-26 | 99 | 180 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.36E-21 | 100 | 181 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 1.68E-21 | 185 | 251 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 8.6E-9 | 187 | 252 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 5.75E-20 | 187 | 250 | No hit | No description |
Pfam | PF08781 | 2.1E-18 | 188 | 250 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVTGGAHLED GDRRPSSATR GGGATTGSWV SGQSVSTSGS VGSPSSRSEH AMATPASDNA 60 FLRLNHLDIH ADDAVTQDAA ANKKKKRGQR AAGGADKSGR GLRQFSMKVC EKVESKGTTT 120 YNEVADELVA EFADPTNSVS TPDQQQYDEK NIRRRVYDAL NVLMALDIIS KDKKEIQWKG 180 LPRTSLSDIE ELKAERLGLR NRIEKKAAYL QELEEQFVGL QNLIQRNEQL YSSGNAPSGG 240 VSLPFILVQV KHFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-39 | 96 | 185 | 6 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0584s0010.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF181998 | 0.0 | AF181998.1 Populus tremula x Populus tremuloides transcription factor DP1 (DP1) mRNA, complete cds. | |||
GenBank | AY307373 | 0.0 | AY307373.1 Populus tremula x Populus tremuloides DP1 (DP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011013076.1 | 1e-160 | PREDICTED: transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 1e-122 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A3N7G5C9 | 1e-151 | A0A3N7G5C9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s09640.1 | 1e-152 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-100 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0584s0010.6.p |