PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0584s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family E2F/DP
Protein Properties Length: 354aa    MW: 38312.9 Da    PI: 7.2749
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0584s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.9e-2798180271
                 E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                             ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  SapurV1A.0584s0010.2.p  98 SGRGLRQFSMK---VCEKVESkGTTTYNEVADELVAEfadptnsvstpdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 180
                             689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094048.3E-1321353IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.2E-4594186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-3597180IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-2599180IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.58E-21100181IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.18E-45185288IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440749.15E-43187297No hitNo description
SMARTSM011381.2E-72187351IPR014889Transcription factor DP, C-terminal
PfamPF087812.3E-41188295IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVTGGAHLED GDRRPSSATR GGGATTGSWV SGQSVSTSGS VGSPSSRSEH AMATPASDNA  60
FLRLNHLDIH ADDAVTQDAA ANKKKKRGQR AAGGADKSGR GLRQFSMKVC EKVESKGTTT  120
YNEVADELVA EFADPTNSVS TPDQQQYDEK NIRRRVYDAL NVLMALDIIS KDKKEIQWKG  180
LPRTSLSDIE ELKAERLGLR NRIEKKAAYL QELEEQFVGL QNLIQRNEQL YSSGNAPSGG  240
VSLPFILVQT RPHATVEVEI SEDMQLVHFD FNSTPFELHD DNYVLKAMKF CERPQSNIMA  300
PNPAAGGGGG AGASMSIMYQ PQTRSSPVTN NPVRPPTSPP LPGIIKARVK HEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3896185693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0584s0010.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1819980.0AF181998.1 Populus tremula x Populus tremuloides transcription factor DP1 (DP1) mRNA, complete cds.
GenBankAY3073730.0AY307373.1 Populus tremula x Populus tremuloides DP1 (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013076.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-158DPB_ARATH; Transcription factor-like protein DPB
TrEMBLB9IFR20.0B9IFR2_POPTR; Uncharacterized protein
STRINGcassava4.1_010769m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-134Transcription factor DP