PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0583s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 291aa    MW: 31639.5 Da    PI: 7.0868
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0583s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09752445
                            S-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding  4 WTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45
                            WT +E++ + +a++++  +     +W  Ia++++ g++l+++k+++ 
  SapurV1A.0583s0020.1.p  7 WTRDEEKAFENAIAMHWIDedsneQWGEIASMVP-GKSLEELKLHYK 52
                            *****************99***************.**********95 PP
2Myb_DNA-binding42.71.3e-13131175347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE+ l++ +  ++G+g+W++I+r + + Rt+ q+ s+ qky
  SapurV1A.0583s0020.1.p 131 PWTEEEHRLFLLGLDKFGKGDWRSISRNLVTSRTPTQVASHAQKY 175
                             7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.598158IPR017884SANT domain
SMARTSM007179.5E-5357IPR001005SANT/Myb domain
PfamPF002495.9E-6652IPR001005SANT/Myb domain
CDDcd001675.35E-8652No hitNo description
Gene3DG3DSA:1.10.10.600.001752IPR009057Homeodomain-like
SuperFamilySSF466893.8E-8761IPR009057Homeodomain-like
PROSITE profilePS5129416.956124180IPR017930Myb domain
SuperFamilySSF466892.51E-17125181IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-17127178IPR006447Myb domain, plants
SMARTSM007171.0E-10128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10129174IPR009057Homeodomain-like
PfamPF002494.5E-11131175IPR001005SANT/Myb domain
CDDcd001672.58E-10131176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MASVITWTRD EEKAFENAIA MHWIDEDSNE QWGEIASMVP GKSLEELKLH YKILVEDVCA  60
IEAGNVPIPN YEGEEATSST EDFHGLSGSM TTEKKSSCGY GSGFMGLGRE SPGHGSKAAS  120
RSEQERKKGI PWTEEEHRLF LLGLDKFGKG DWRSISRNLV TSRTPTQVAS HAQKYFIRLN  180
SMNRDRRRSS IHDITSLNNG DVSSHQPLIT GRQVSTSPAG PAPATGPPVN HRTRTHVPGL  240
AIYGPPNGHP VAPPGHMATA VGTPVMLPPP GHHPYVVPVA YPMAPQTMHQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-157711173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0583s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376751.11e-176transcription factor MYBS1
SwissprotB8A9B25e-81MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH595e-81MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLU5FTN21e-175U5FTN2_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05720.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.17e-72MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]