PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0580s0140.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 26051.9 Da PI: 7.1016 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.4 | 3.8e-06 | 81 | 129 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h + Er RR++ ++++ L ++lP++ +K +K +i +A + I++L+ SapurV1A.0580s0140.1.p 81 CYQHMMSERLRRQKERNGYLALHSVLPHD-----TKKDKNSIMLMAAKQIQELE 129 567999**********************9.....8999999*******999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-10 | 76 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.16E-6 | 77 | 129 | No hit | No description |
PROSITE profile | PS50888 | 11.42 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-7 | 82 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0045 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDHFFHQQLL QDDVFCYENC PVNQSAFVPY ICRPWGTGSE VGVGSSSMEV HPTNMNKRMI 60 ELVKRSFTVR IETQEPDSKR CYQHMMSERL RRQKERNGYL ALHSVLPHDT KKDKNSIMLM 120 AAKQIQELEM YKEMLKIRND EIEERLAASA IGNDESTQIR IEVANPTSRV DPMIDVLKCL 180 KNLGSKTRSI RSQFSDKELV AVMEIETKIE AAEIENAVKR TLERN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 91 | KRCYQHMMSERLRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0580s0140.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024462136.1 | 1e-142 | transcription factor bHLH92 | ||||
Refseq | XP_024462137.1 | 1e-142 | transcription factor bHLH92 | ||||
Refseq | XP_024462138.1 | 1e-142 | transcription factor bHLH92 | ||||
Refseq | XP_024462139.1 | 1e-142 | transcription factor bHLH92 | ||||
Refseq | XP_024462140.1 | 1e-142 | transcription factor bHLH92 | ||||
TrEMBL | A0A2I4KKB6 | 1e-141 | A0A2I4KKB6_POPTR; BHLH family protein | ||||
STRING | POPTR_0008s16170.1 | 1e-141 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12572 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 6e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0580s0140.1.p |