PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0571s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 440aa    MW: 49974.9 Da    PI: 6.4311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0571s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-17210256148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g W+++Ed llv++vkq+G + W++Ia+++  gR +kqc++rw+++l
  SapurV1A.0571s0110.1.p 210 KGQWSPQEDRLLVHLVKQYGIKKWSLIAKMLE-GRVGKQCRERWHNHL 256
                             799*****************************.*************97 PP
2Myb_DNA-binding55.81e-17262304145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             +++W++eEde+l++a++  G++ W+ Ia++++ gRt++ +k++w+
  SapurV1A.0571s0110.1.p 262 KDAWSEEEDEILIKAHRDIGNR-WAEIAKRLP-GRTENTIKNHWN 304
                             679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.56205260IPR017930Myb domain
SuperFamilySSF466891.58E-30208303IPR009057Homeodomain-like
SMARTSM007174.6E-16209258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-28211263IPR009057Homeodomain-like
PfamPF139214.0E-18213270No hitNo description
CDDcd001675.95E-15213256No hitNo description
SMARTSM007176.4E-17261309IPR001005SANT/Myb domain
PROSITE profilePS5129422.325261311IPR017930Myb domain
CDDcd001676.79E-13264307No hitNo description
Gene3DG3DSA:1.10.10.601.9E-22264311IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEFNTKLREE IPFLSSLLSE HTLNPEGTDE FSIDEAFSSR GLFYNLHHLD NSHLINSSPL  60
ITPSSYLDHF TMEGSSKNPF SGTCIDPARL DSLPSGFSSH DLVNACKSTP SLPSGCGDGP  120
LHGLPGGPVR EHDYQKIFEA RSSNQKEMKG QRKFEEIGLM SAAAINGVST DESTDQDSKY  180
HHKQVDHHRK ARRLLLEKDS KVDGRSQVIK GQWSPQEDRL LVHLVKQYGI KKWSLIAKML  240
EGRVGKQCRE RWHNHLRPDI KKDAWSEEED EILIKAHRDI GNRWAEIAKR LPGRTENTIK  300
NHWNATKRRQ LSRRRSGKDL NSKITLLQSY IKMVTSSPST QEIKEEAKTE DVNSNSQNQN  360
ESSGSSSTDL EIPYEHDQNP NLFHDSYGFM SFLEEMPCSC VVDESNMEFE ISELDRLMKG  420
AEVKKEMDLV EMITQGIIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-452073111105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0571s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300044.10.0transcription factor MYB118
TrEMBLB9GI430.0B9GI43_POPTR; Uncharacterized protein
STRINGPOPTR_0001s35140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-66myb domain protein 118