PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0570s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 557aa    MW: 60624.3 Da    PI: 6.2076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0570s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.3e-09370417455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  SapurV1A.0570s0150.1.p 370 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 417
                             8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-17364436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.99E-11364421No hitNo description
Gene3DG3DSA:4.10.280.103.4E-17366435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663366416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-6370417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MEKDKLFMSE GANTAAAIWN SCGFGMEMQA NELSCGPEQL ANCFLNPNWD NSLDQSDPFE  60
SAMSSIVSSP VASSANANGI PNAGVGGDSF MIGELIGRLG NICNSGDISP QSYVNNNNST  120
NTSCYNTPLN SPPKLNLSMM DSQMRGNLPI PGKSVVKRPS LAPFPADFVQ RAARYSCFGS  180
NNLGGHNGQF GLNESELING LMPRVEPGKL SRVSSSNSMR VTVSQANVQE SNKSSPQDGS  240
LNSDKKFSRQ PRPSTSENGD SREESSVSEQ VPGGKLSMKS QNDANSRKRK SIPRGKAKET  300
PSSSPSASDA MVAAENDESR EKRSKSDETN GSDKEEENGN QKQSKSNSKL PEPPKDYIHV  360
RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT GKAVMLDEII NYVQSLQRQV  420
EFLSMKLSSV NPRMEFNMET LLSKDIFQSR GSMPDGLYPS DDSAQVFPYG YQSQQGLALQ  480
NLMPSNAETQ FSMNPLNAAL RRNPSMHLPP LGDAAAHQAS AMWEDDLQSF VQMGYGQNHQ  540
ESFQGSVPST HMKIEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285290SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0570s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2328450.0CU232845.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320444.10.0transcription factor bHLH77 isoform X2
TrEMBLB9IAB60.0B9IAB6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s14650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.12e-79bHLH family protein