PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0569s0120.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 340aa    MW: 37177.4 Da    PI: 5.1931
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0569s0120.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19255289135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             Cs+Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l
  SapurV1A.0569s0120.2.p 255 CSHCGVQKTPQWRAGPNGSKTLCNACGVRYKSGRL 289
                             *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.7E-8615331IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.598249285IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-16249303IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-14251312No hitNo description
Gene3DG3DSA:3.30.50.102.4E-15253287IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.20E-15254302No hitNo description
PfamPF003202.1E-17255289IPR000679Zinc finger, GATA-type
PROSITE patternPS003440255280IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEYVEGALKT SFGKEMAVKF SPQVFDDFWA VNVPNGMSSD DFSVDKLLDF SNENDFIEEE  60
EEEGDKEKPC VFSASASPKQ EALDEDKSSD SSPSFAVKDD FFSVPTSELC VPTDDFASLE  120
WLSHFVEDSN SEYAAPFPAS ISPPEPHKEN PDEQEKVVLE EPCFKTPVPG KARSKRTRNG  180
VRVWPLGSPS LTESSSSSSS ISSSSPSNPW LIYSKPGSKV EPVWFEKPVA KKMKRNPADE  240
AAASGGGGTS SSRRCSHCGV QKTPQWRAGP NGSKTLCNAC GVRYKSGRLL PEYRPACSPT  300
FSKEVHSNHH RKVLEMRRKK EGPVPTEPGL VQPFVPSLG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0569s0120.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310287.20.0GATA transcription factor 5
SwissprotQ9FH574e-84GATA5_ARATH; GATA transcription factor 5
TrEMBLB9HFC80.0B9HFC8_POPTR; GATA transcription factor
STRINGPOPTR_0007s13700.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-76GATA transcription factor 5