PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0561s0300.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 505aa    MW: 55645.8 Da    PI: 6.6775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0561s0300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.52.8e-49191451128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                             + pGfrF Ptd el+++yLkkk+eg +  + evi+e++i+k+ePwdLp k+v  +e+ew+fFs r +ky++g++++rat++gyWkat
  SapurV1A.0561s0300.1.p  19 MFPGFRFTPTDVELISYYLKKKIEGAERCV-EVISEIEICKHEPWDLPaKSVMPSESEWFFFSARGRKYPNGSQSKRATEHGYWKAT 104
                             579************************777.99***************666667899****************************** PP

                     NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             gk+++v+s ++e++g+k+tLvf+ grapkge+t+W+mhey +
  SapurV1A.0561s0300.1.p 105 GKERNVKS-GSEVIGTKRTLVFHAGRAPKGERTEWIMHEYCM 145
                             ********.9******************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-5410160IPR003441NAC domain
PROSITE profilePS5100552.32919161IPR003441NAC domain
PfamPF023656.7E-2521144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MATGGVSPET QMSIEASSMF PGFRFTPTDV ELISYYLKKK IEGAERCVEV ISEIEICKHE  60
PWDLPAKSVM PSESEWFFFS ARGRKYPNGS QSKRATEHGY WKATGKERNV KSGSEVIGTK  120
RTLVFHAGRA PKGERTEWIM HEYCMQGQSQ DSLVVCRLRK NAEFRPSDTS NRGSVNETHL  180
STTHSSGDAV SDGGIGQGGV PSREKAAECS KSNDSCSIEQ LSSASESEQK LSNDAALAET  240
SSHQKDSDDE EDCFADILKH DIIKLDEVLL SSPPGLRSKV ASNPEAKTRS EQPGEIFISE  300
ALPLPSIPLQ GTSKQPVKIF MSASLPLHST PSQGTEHQPV EMFISEALPL HSTPSRGTEH  360
RPVEMFMSEA LPLHSTPSRG TEHQPVEMFM SETLPLHSTP SQGTEHQPVE VFMSEALPLP  420
STPSQGTASR RIMLRRQMPG MSQAEMHTNN VDRESKLPVH CAKKGKLRHI SAVFILLALL  480
VSLIAGFKQV ERIIYASMYR TSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-4111604164NO APICAL MERISTEM PROTEIN
1ut4_B3e-4111604164NO APICAL MERISTEM PROTEIN
1ut7_A3e-4111604164NO APICAL MERISTEM PROTEIN
1ut7_B3e-4111604164NO APICAL MERISTEM PROTEIN
4dul_A3e-4111604164NAC domain-containing protein 19
4dul_B3e-4111604164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0561s0300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043268.10.0PREDICTED: NAC domain-containing protein 89-like isoform X1
SwissprotQ9XIN74e-96NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A2K1Z8S20.0A0A2K1Z8S2_POPTR; Uncharacterized protein
STRINGPOPTR_0009s16290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-98NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]