PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0555s0160.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 337aa    MW: 37566 Da    PI: 6.5128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0555s0160.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32.1e-191461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEde+l+d++k+ G ++Wk+ ++  g++R++k+c++rw +yl
  SapurV1A.0555s0160.2.p 14 KGPWTPEEDEKLIDYIKRNGHENWKALPKLAGLNRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding52.98.2e-1767111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg++++eE+  +v+++  lG++ W++Ia++++ gRt++++k++w+++
  SapurV1A.0555s0160.2.p  67 RGKFSEEEERVIVNLHSVLGNK-WSRIANHLP-GRTDNEIKNFWNTH 111
                             89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.843961IPR017930Myb domain
SuperFamilySSF466891.05E-3012108IPR009057Homeodomain-like
SMARTSM007171.7E-151363IPR001005SANT/Myb domain
PfamPF002492.1E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-241568IPR009057Homeodomain-like
CDDcd001672.82E-121661No hitNo description
PROSITE profilePS5129427.39662116IPR017930Myb domain
SMARTSM007171.4E-1566114IPR001005SANT/Myb domain
PfamPF002495.2E-1567111IPR001005SANT/Myb domain
CDDcd001679.27E-1269112No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVRSPCSHGS DFKKGPWTPE EDEKLIDYIK RNGHENWKAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEERVIVN LHSVLGNKWS RIANHLPGRT DNEIKNFWNT HIRKKLLQMG  120
IDPNTHKPRT DLDHFLNLSQ FLGASQFGNS ADPLDNFLQL QAEAAQLANI HVLRNLLQIM  180
NTKTLTNLEN NSLLGSQNPN LFEGLVNEAT ISNTRDQVNP VSQDLLNPLA TQQAPASDFQ  240
AISNLWARYE GGFGPEGLNI NGNSLSSSCG IQTDQNPLPA LVSDSTSPGI SIVKQTESKG  300
NPSNCSTGTP TSTVFEAWEK LIDDDNYSSY WKDILE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31111164108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0555s0160.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368379.10.0transcription factor MYB53
TrEMBLB9MU450.0B9MU45_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.14e-80myb domain protein 107