PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0555s0160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 347aa MW: 38639.1 Da PI: 6.6012 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.2 | 2.2e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+d++k+ G ++Wk+ ++ g++R++k+c++rw +yl SapurV1A.0555s0160.1.p 14 KGPWTPEEDEKLIDYIKRNGHENWKALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.6e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE+ +v+++ lG++ W++Ia++++ gRt++++k++w+++ SapurV1A.0555s0160.1.p 67 RGKFSEEEERVIVNLHSVLGNK-WSRIANHLP-GRTDNEIKNFWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.843 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.06E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.20E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.396 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MVRSPCSHGS DFKKGPWTPE EDEKLIDYIK RNGHENWKAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEERVIVN LHSVLGNKWS RIANHLPGRT DNEIKNFWNT HIRKKLLQMG 120 IDPNTHKPRT DLDHFLNLSQ FLGASQFGNS ADPLDNFLQL QAEAAQLANI HVLRNLLQIM 180 NTKTLTNLEN NSLLGSQNPN LFEGLVNEAT ISNTRDQVNP VSQDLLNPLA TQQAPASDFQ 240 AISNLWARYE GGFGPEGLNI NGNSLSSSCG IQTDQNPLPA LVSDSTSPGI SIVKQTESKG 300 NPSNCSTGTP TSTVFEAWEK LIDDDNYSSY WKDILDLTSS SWSHNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 11 | 116 | 4 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00438 | DAP | Transfer from AT4G17785 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0555s0160.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006368379.1 | 0.0 | transcription factor MYB53 | ||||
TrEMBL | B9MU45 | 0.0 | B9MU45_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s02240.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17785.1 | 2e-81 | myb domain protein 39 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0555s0160.1.p |