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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
SapurV1A.0555s0090.4.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family |
C3H |
| Protein Properties |
Length: 359aa MW: 39062 Da PI: 7.1533 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0555s0090.4.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.9 | 3.4e-08 | 91 | 116 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f++ GtC+y +C+FaH++
SapurV1A.0555s0090.4.p 91 FKTKLCCKFRA-GTCPYITNCNFAHSM 116
69*********.*************95 PP
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| 2 | zf-CCCH | 18.6 | 3.4e-06 | 163 | 188 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
yk + C+ f+ C+yGd+C+F H+
SapurV1A.0555s0090.4.p 163 YKGRHCKKFYTEEGCPYGDNCTFLHD 188
78888********************7 PP
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| 3 | zf-CCCH | 41.8 | 1.8e-13 | 241 | 266 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
SapurV1A.0555s0090.4.p 241 WKTRICNKWELTGYCPFGNKCHFAHG 266
8************************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 1.16E-7 | 88 | 121 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.5E-14 | 88 | 123 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.624 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0015 | 90 | 116 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.8E-5 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.5E-9 | 160 | 190 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.19E-7 | 161 | 190 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.23 | 162 | 190 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.058 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.2E-17 | 236 | 270 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.23E-10 | 237 | 271 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.3E-9 | 240 | 267 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.981 | 240 | 268 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.0E-10 | 241 | 266 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MDYNRDFSGG NVISITGPDS WVSNSSDSNS VWATEDDYRF WNNSDVLNDN TLSNSNYQSS 60
ETRSGSEPPN KKSKNNSQEL NSKKSIGKMF FKTKLCCKFR AGTCPYITNC NFAHSMEELR 120
RPPPNWQEIV AAHEEEKGNT VDAREEFQIP SIVGFGAETQ RSYKGRHCKK FYTEEGCPYG 180
DNCTFLHDEQ SKNRESVAIS LGPGGYGGGG GGGGGGGAVA VAGSGGGNTG SNAVNVKPSN 240
WKTRICNKWE LTGYCPFGNK CHFAHGAGEL HRYGGGLVDM DAKDSAFFPV ESKQGGVPSK 300
TPPETVVTSV TSVPNSDVYV QSQKSSILIQ RPGQRTHQKW KGPDKISRIY GDWIDDIE*
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