PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0555s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 301aa    MW: 33749.4 Da    PI: 6.9496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0555s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-1196147155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+R + +N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  SapurV1A.0555s0070.1.p  96 QRMTHIAIERNRSKLMNEYLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 147
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-1594165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-1094151No hitNo description
Gene3DG3DSA:4.10.280.107.0E-1294151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.72595146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-996147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-8101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAREALSSSE FLNFIIYDTI PATPYNYHDS LETASFLLEN LKPQDHGVSV NSSSLTTQQI  60
CSMGRDSGQN LLAEQGKKKR RRKPRVCKNR EEAETQRMTH IAIERNRSKL MNEYLAVLRS  120
LMPESYVQRG DQASIVGGAI EFVKELEQLL QSLEARKLKL YQGITGPNHD IDDATTSSEF  180
PPPPFAQFFV YPQYTWSQTP NKFTSKTKAS IAEIEVTLIE THANLRILSR RVSRQLSKLA  240
AGFQTLSLTV LHVNVTTMDP LVLYSISARL EEGCQLTSVD DIAGAVHHML RIIDEETGLC  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681KKKRRR
27682KKKRRRK
37683KKKRRRKP
47782KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0555s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018549.10.0PREDICTED: transcription factor bHLH71-like isoform X2
SwissprotQ9C7T47e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLU5GN121e-177U5GN12_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02350.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]