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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0553s0100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 35921.4 Da PI: 9.1021 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.8e-18 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEdell+++vk+ G g+W+t +++ g+ R++k+c++rw +yl SapurV1A.0553s0100.1.p 28 KGPWTPEEDELLANYVKKEGEGRWRTLPNRAGLARCGKSCRLRWMNYL 75 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.4e-14 | 86 | 124 | 6 | 46 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ SapurV1A.0553s0100.1.p 86 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNT 124 89***************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-23 | 19 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.167 | 23 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-29 | 25 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-13 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 28 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.37E-11 | 30 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 78 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.907 | 80 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-13 | 80 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.05E-11 | 86 | 126 | No hit | No description |
Pfam | PF00249 | 6.0E-13 | 86 | 124 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MRNPSSTTST RSKITVPTPC CSKVGIKKGP WTPEEDELLA NYVKKEGEGR WRTLPNRAGL 60 ARCGKSCRLR WMNYLRPSVK RGHIAPDEED LILRLHRLLG NRWSLIAGRI PGRTDNEIKN 120 YWNTSLSKKL ISQGIDPRTH RPLKPNPDSS EMANVPVQNR NPKSPPVLDE NGRVYRTVAT 180 RVRENFTAPP NLDDQYPSQV AADATEYWPN RDMGSLQSGY DQGKTDEDLI EDIGNEDTLS 240 SFLDSLLNDN VFVYQQRQQL QQQNMFGLSS KLVVSSSQIL SHGNIWEAQV SPPMAAFGDK 300 SVGGAPSNSL PVLTHLPAPL H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 28 | 130 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0553s0100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446880.1 | 0.0 | transcription repressor MYB5 | ||||
TrEMBL | A0A2K1WP06 | 1e-179 | A0A2K1WP06_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s05210.1 | 1e-180 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3894 | 30 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-77 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0553s0100.1.p |