PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0552s0030.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 277aa MW: 30828.5 Da PI: 7.5807

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0552s0030.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.5e-15	27	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l SapurV1A.0552s0030.2.p 27 RGNFTHHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 72 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.182	1	21	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	9.0E-10	8	32	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.81E-21	8	80	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.349	22	76	IPR017930	Myb domain
SMART	SM00717	1.2E-14	26	74	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-14	27	72	IPR001005	SANT/Myb domain
CDD	cd00167	3.64E-10	29	71	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-20	33	77	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGFSGLLRCS KSCRLRWTNY LRPGIKRGNF THHEEKMIIH LQALLGNRWA AIASYLPQRT 60 DNDIKNYWNT HLKKKLKKLQ AGQEGQSRDG LSVTGSQQIC RGQWERRLQT DIHMARQALC 120 EALSPEKPDS LFTELKPSGG YEKPAPASLY ASSTENIAKL LKGWMRSGPK QSLTNSTTTQ 180 NSLNNMAVAD SLSSEETLNR ADKNGTELSE AFESLFGFDS FDSSHSDFSQ STSPDTGLLQ 240 EESKPNPGAQ VPLSVIERWL FDEGAMQGIE YLSEAH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-18	8	76	40	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0552s0030.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216459	0.0	AC216459.1 Populus trichocarpa clone POP074-L11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013219.1	1e-171	PREDICTED: myb-related protein 306-like
Swissprot	P81392	1e-79	MYB06_ANTMA; Myb-related protein 306
TrEMBL	B9H0F8	1e-166	B9H0F8_POPTR; Uncharacterized protein
STRING	POPTR_0004s12530.1	1e-166	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	6e-66	myb domain protein 94

Link Out ? help Back to Top
Phytozome	SapurV1A.0552s0030.2.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]