PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB

Protein Properties

Length: 317aa MW: 35279.6 Da PI: 7.532

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0552s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl SapurV1A.0552s0030.1.p 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	47.9	3.1e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l SapurV1A.0552s0030.1.p 67 RGNFTHHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.347	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.18E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-24	65	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.055	66	116	IPR017930	Myb domain
SMART	SM00717	1.2E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.1E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	6.64E-10	69	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF THHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ 120 AGQEGQSRDG LSVTGSQQIC RGQWERRLQT DIHMARQALC EALSPEKPDS LFTELKPSGG 180 YEKPAPASLY ASSTENIAKL LKGWMRSGPK QSLTNSTTTQ NSLNNMAVAD SLSSEETLNR 240 ADKNGTELSE AFESLFGFDS FDSSHSDFSQ STSPDTGLLQ EESKPNPGAQ VPLSVIERWL 300 FDEGAMQGIE YLSEAH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-24	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0552s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216459	0.0	AC216459.1 Populus trichocarpa clone POP074-L11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013219.1	0.0	PREDICTED: myb-related protein 306-like
Swissprot	P81392	1e-117	MYB06_ANTMA; Myb-related protein 306
TrEMBL	B9H0F8	0.0	B9H0F8_POPTR; Uncharacterized protein
STRING	POPTR_0004s12530.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1016	34	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-102	myb domain protein 94

Link Out ? help Back to Top
Phytozome	SapurV1A.0552s0030.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]