PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0537s0200.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 566aa MW: 62448.2 Da PI: 4.7418 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.3e-18 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l SapurV1A.0537s0200.6.p 39 KGPWTSAEDAILIEYVKKHGEGNWNSVQKHSGLLRCGKSCRLRWANHL 86 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.2e-17 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l++++++++G++ W++ a++++ gRt++++k++w++ SapurV1A.0537s0200.6.p 92 KGAFTQEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.951 | 34 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-30 | 38 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-16 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.31E-12 | 41 | 86 | No hit | No description |
PROSITE profile | PS51294 | 26.872 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-17 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-16 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-26 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-12 | 94 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 566 aa Download sequence Send to blast |
MSRTTNECED GMISKDQTEL PLGEEGSYDE CTNGVVLKKG PWTSAEDAIL IEYVKKHGEG 60 NWNSVQKHSG LLRCGKSCRL RWANHLRPNL KKGAFTQEEE QLIIELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQASQGS QQCLDINRID SGNKGQHDVL 180 QTHNYGIPDV MFDNLRTNQS ILPYVPELPD ISASSVLMKG LCSSQHGSFM SPTMHRQKRL 240 RETTNLQSSF SGGMKNDFHV FDQFQDGDKA AQYFGLSFPF DPDSVAKNPE IFGENQGSHT 300 LANGNFSASK PTSEAVKLEL PSLQYAETDL GGWGASCSSS PLIESVDTFI QSPPTGTVES 360 NSPRNSGLLD ALLYEARTLS SAKNRSSDKS SNSSTITPGD DADCSVLNFS ETEWEDYGDP 420 ISPLCHPVTS LFRECTPISA SGSSLDESPP TETLTEYNMK SEPVDHTWTP DREKESYTHL 480 NITRPDALLD SDWLEHDSGY GKDQVIMPEA IAALLGDDLS SEYKQMDLSS EYKQMDAGAS 540 TGHGWGPGSC SWNNMPAVCQ MSEFP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-32 | 37 | 140 | 5 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0537s0200.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM034648 | 9e-91 | KM034648.1 Jatropha curcas clone JcMYB028 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452281.1 | 0.0 | transcription factor MYB33 isoform X2 | ||||
TrEMBL | A0A3S9LX19 | 0.0 | A0A3S9LX19_POPTO; Transcription factor GAMYB | ||||
TrEMBL | A0A3S9LX42 | 0.0 | A0A3S9LX42_POPTO; Transcription factor GAMYB | ||||
STRING | POPTR_0003s18900.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-129 | myb domain protein 33 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0537s0200.6.p |