PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0537s0190.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 654aa    MW: 74658.8 Da    PI: 8.5641
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0537s0190.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-09596642347
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                              W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ ++
  SapurV1A.0537s0190.2.p 596 VWSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKKFTSL 642
                             6********************************.*********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.7E-1993174IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1109.0E-2193196IPR001623DnaJ domain
SMARTSM002711.6E-1395170IPR001623DnaJ domain
PfamPF002261.7E-1796175IPR001623DnaJ domain
PROSITE profilePS5007618.30396178IPR001623DnaJ domain
CDDcd062579.95E-1396167IPR001623DnaJ domain
PRINTSPR006254.0E-8101119IPR001623DnaJ domain
PRINTSPR006254.0E-8119134IPR001623DnaJ domain
PRINTSPR006254.0E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
SuperFamilySSF466895.61E-7462509IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-4463508IPR009057Homeodomain-like
PROSITE profilePS512935.912464519IPR017884SANT domain
SMARTSM007172.1E-5465518IPR001005SANT/Myb domain
CDDcd001677.33E-4468508No hitNo description
Gene3DG3DSA:1.10.10.603.0E-6591642IPR009057Homeodomain-like
PROSITE profilePS512939.425592647IPR017884SANT domain
SMARTSM007174.0E-10593645IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-9595651IPR009057Homeodomain-like
PfamPF002499.1E-8596642IPR001005SANT/Myb domain
CDDcd001678.55E-7597643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAIQTSFLLI SYSQELVDGQ PLHVSSNSLP FKALKFEPAG HAFHAAALKL LGWEEEDIET  60
EDQKVSNDKQ QSYMPSSESY STKGKKKSGS GDTQQDHYAL LGLGHLRYLA TEEQIRKSYR  120
EVALKYHPDK QAAILLAEET ESAKQSKKDE IESHFKAIQE AYEALIDPVK RRIYDSTDEF  180
DDEIPTDCAP QDFFKVFGPA FTRNGRWSVN QTLPSLGDEK TSIKEVDSFY NFWYSFKSWR  240
EFPHADEFDL EQAESRDHKR WMERQNAKLS EKARREDYAR IRTLVDSAYK RDPRILRRKE  300
EEKAEKQRKK EAKYLAKRLQ EEEAARAAEE EKRQKEMEEK RVAEAALQQK KLKEKEKKLL  360
RKERSRLRNL SGSVLSQCLL NLREADVEDL CMSLGIEQLR SLCDRIEAKE VLEQAKVLRD  420
ACGCDHDSGS SKQEEKKIQE EKKISRQNGS LNSNGSTPLS SSVKKEKPWG REEIELLRKG  480
TQKYPKGTSR RWEVISEFIG TGRSVEEILK ATKTVLLQKP DAAKAFDSFL EKRKPAQSIA  540
SPLSTRDDIE GVSTVQALES SAAKITQEES SRDTDKQKSD DVVTTNGVSS SADQDVWSAV  600
QERALVQALK TFPKETSQRW ERVAAAVPGK TVNQCKKKFT SLKESFRNKK NTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A7e-2019229520123Zuotin
5dje_B7e-2019229520123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0537s0190.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2227300.0CU222730.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303963.10.0dnaJ homolog subfamily C member 2
RefseqXP_024453318.10.0dnaJ homolog subfamily C member 2
RefseqXP_024453319.10.0dnaJ homolog subfamily C member 2
TrEMBLB9GXK50.0B9GXK5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s18930.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain