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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0535s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 27501.2 Da PI: 8.4898 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 94 | 142 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ rE+ RRd++N++f eL ++l + + +K +Ka+iL A++ + +Lq SapurV1A.0535s0060.1.p 94 SKACREKLRRDKLNDKFMELGSILDPG---RTPKTDKAAILLDAIRIVTQLQ 142 6789**********************8...8******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.881 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.67E-8 | 93 | 142 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.3E-14 | 94 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-9 | 94 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-13 | 95 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-10 | 96 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00225 | 156 | 188 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.0E-4 | 157 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MATAGNAGWA SDSFFMDDIT AHDPNFSGFS WPSPSPPVQQ HQHHQTLNAF APVAAASSPN 60 FGVEIDGSIG DCDVQKETNS KKRSRSELCS ASSSKACREK LRRDKLNDKF MELGSILDPG 120 RTPKTDKAAI LLDAIRIVTQ LQGEAKKLKD SNSSLQEKIK ELKAEKNELR DEKQRLKAEK 180 EKLEQQLKAM NSQPSFMPAP PAIPAAFTTQ GQAPGNKLMP FISYPGVAMW QFMPPAAVDT 240 SQDHVLRPPV A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0535s0060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU222686 | 0.0 | CU222686.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011030891.1 | 1e-146 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 1e-106 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | B9I085 | 1e-141 | B9I085_POPTR; BHLH family protein | ||||
STRING | POPTR_0011s13580.1 | 1e-142 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 4e-75 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0535s0060.1.p |