PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0534s0150.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YA
Protein Properties Length: 303aa    MW: 32940.9 Da    PI: 7.1195
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0534s0150.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.52.9e-30131187158
               CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             ++p+YVNaKQy +I++RR++Rak+e +kkl +k+rkpylheSRh+hA+rR+R+sgGrF
  SapurV1A.0534s0150.4.p 131 QDPVYVNAKQYPGIIRRREQRAKAEVDKKL-IKARKPYLHESRHQHAMRRERSSGGRF 187
                             68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.9E-33129190IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.596130190IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-26133187IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-21133155IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860135155IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-21164187IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MPPAMTGGNA SNSEGHNDSE SNDDQSLSSG RLNEEDADAT KDSQSTASSH LGNHGQLHNL  60
QGLVSSMATM HNGLSQSPQF ELVSHSIACA SNPYQDACYS GMMAYGHHPL GYPQFVGMPH  120
ARMLLPLEVA QDPVYVNAKQ YPGIIRRREQ RAKAEVDKKL IKARKPYLHE SRHQHAMRRE  180
RSSGGRFAKK TGDDASKNTS EGKLNGSGPV HASQSRSSSG SELLPSDSVE TWNSSDGQKE  240
ARESQVHDTF EAHDRVNRGG LYQKHGGLQS SEYGLYLGDN EDGDRPGQQL GNQAKRRSYG  300
PQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-15131204275NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0534s0150.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464106.10.0nuclear transcription factor Y subunit A-1 isoform X2
RefseqXP_024464107.10.0nuclear transcription factor Y subunit A-1 isoform X2
SwissprotQ9LXV53e-60NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A2K1Z3570.0A0A2K1Z357_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05760.11e-176(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-60nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]