PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0529s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 347aa    MW: 37010 Da    PI: 8.6392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0529s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11279324655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++Er RR ri  ++ +L++l+P+     +k  s a++Le+Av++Ik Lq
  SapurV1A.0529s0060.1.p 279 SIAERERRTRISGKLKTLQDLVPNM----DKQTSYADMLELAVKHIKGLQ 324
                             689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.075273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-14276338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-11277328No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13278336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-13279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-9279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MYQQQQQPPS SSSSPQKSNL PSGLTRYGSA PGSFLTRAVD SVVGADRELS GSGSTSLLRR  60
QQHFSGDSSS ITSEPTCKVS SSSCDRKAPK SGGGGLQRSN GLNEIAHGAG SLVRQRSSPA  120
GFLSHLANEN GGFSITRGNG SYNSRNGSGG GPSVSRLKSQ LSFTRQESLS QISEVSENVV  180
EGIGSDNGCQ NSTHSYSAAS FGMESWDTPN SIVFSGHPPK QARTGDGDIY NCFNALETQF  240
SLPQTTLEMA TVEKLLQIPE DSVPCKIRAK RGCATHPRSI AERERRTRIS GKLKTLQDLV  300
PNMDKQTSYA DMLELAVKHI KGLQNEVEKL HKEMEGCTCG CKQSTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0529s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470171e-123EF147017.1 Populus trichocarpa clone WS01226_D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321112.10.0transcription factor bHLH128
SwissprotQ8H1025e-88BH128_ARATH; Transcription factor bHLH128
TrEMBLB9IAD10.0B9IAD1_POPTR; Uncharacterized protein
STRINGcassava4.1_010743m1e-165(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]